Ruegeria pomeroyi: SPO0677
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Entry
SPO0677 CDS
T00215
Name
(GenBank) AMP-binding protein
KO
K20034
3-(methylthio)propionyl---CoA ligase [EC:
6.2.1.44
]
Organism
sil
Ruegeria pomeroyi
Pathway
sil00920
Sulfur metabolism
sil01100
Metabolic pathways
sil01120
Microbial metabolism in diverse environments
Module
sil_M00990
Dimethylsulfoniopropionate (DMSP) degradation, demethylation pathway, DMSP => methanethiol
Brite
KEGG Orthology (KO) [BR:
sil00001
]
09100 Metabolism
09102 Energy metabolism
00920 Sulfur metabolism
SPO0677
Enzymes [BR:
sil01000
]
6. Ligases
6.2 Forming carbon-sulfur bonds
6.2.1 Acid-thiol ligases
6.2.1.44 3-(methylthio)propionyl---CoA ligase
SPO0677
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
AMP-binding
AMP-binding_C
Motif
Other DBs
NCBI-ProteinID:
AAV93985
UniProt:
Q5LVM3
LinkDB
All DBs
Position
706830..708458
Genome browser
AA seq
542 aa
AA seq
DB search
MTGSTIYDQHLDRTPANFTPLSPLSYIERTAAVYPDYPSVVYGDRRYTWAETYTRCRRLA
SALAGRGLGKGDTVSIIAANIPEMYEAHFGVPMAGAVLNAINTRLDAPIIAFILSHAEAR
VLIVDPEFSEVVRDALAQIDRPDLLVVDIEDPSFAGGAPVGTLSYDALLAEGDPDFDWSL
PGDEWDAIALNYTSGTTGNPKGVVYHHRGAALNATSNILTWGMPQHAVYLWTLPMFHCNG
WCFPWTMAANAGVSVCLRAVRDEPIYRAFREEKVTHFCGAPIVLNMLANAPDHMKDFDHQ
IKVMTAGAPPPAAVIEKMEAMGVDVTHVYGLTETYGPSVVCAWKEEWDGRPGAERAALKV
RQGVRYVALSGLMVADPETLEPVPADGETMGEIFMQGNIVMKGYLKNPDATDRAFRGGWF
ASGDLGVMHPDGYIALKDRSKDIIISGGENISSVEVEDVLYKHPAVMEAAVVARPDEKWG
ETPCAFVELKPGQSVEAADLIAHCRANMAHFKAPKTVVFGELPKTSTGKIQKFLLRERAR
AL
NT seq
1629 nt
NT seq
+upstream
nt +downstream
nt
atgaccggcagcactatctatgaccagcatctggaccggacgccggccaatttcacgccc
ctctcgccgctcagctatatcgagcggaccgcggcggtctaccccgactatccttccgtc
gtttatggcgatcgtcgctatacctgggccgaaacctatacgcgctgccgacggctggcg
agtgctctggccgggcgcggcctgggcaagggcgataccgtttcgatcatcgccgccaat
atccccgaaatgtacgaggcgcatttcggcgtgccgatggcgggggcggtgctgaacgcg
atcaacactcggctggatgcgcccatcatcgccttcatcctgtcccatgccgaggccagg
gtactgatcgtcgaccccgaattttccgaggtggtgcgcgacgccttggcacagatcgac
cggcccgacctgttggtcgtggatatcgaggacccaagctttgccggcggcgcgccggtg
ggcacgctgagctatgatgcgcttttggcagagggagacccggatttcgactggtcgctg
ccgggggacgaatgggatgccatcgcgctcaactatacctcgggcaccacgggcaacccc
aagggtgtggtctatcaccatcgcggcgcggcgctgaacgcgacctcgaacatcctgacc
tggggcatgccgcaacacgcggtctatctgtggacgctgccgatgtttcactgcaacggc
tggtgtttcccctggaccatggcggccaatgccggggtatcggtctgcctgcgtgcggtg
cgcgacgagccgatctatcgcgccttccgcgaggagaaggtgacccatttctgcggcgcg
cccatcgtgctgaacatgctggccaacgcgcccgatcacatgaaggactttgaccatcag
atcaaggtgatgaccgcaggcgcgccgccgccggctgcggtgatcgagaagatggaggcg
atgggcgtcgacgtcacccatgtctatgggctgaccgagacctatggcccctcggtggtc
tgtgcctggaaagaggagtgggatggtcggcccggggccgagcgcgcggcgctgaaggtg
cgccagggggtgcgttatgtggcgctgtcggggctgatggtggccgatcccgaaacgctt
gagccggtgcccgccgatggcgagacgatgggcgagatcttcatgcagggcaatatcgtc
atgaagggctatctgaagaaccccgatgccaccgacagggcgtttcgcggcggctggttc
gcctcgggcgatctgggggtgatgcatcccgatggctatatcgcgctcaaggaccggtcc
aaggatatcattatctcggggggcgagaacatctcgtcggtcgaggtcgaggatgtgctc
tataaacatcccgcagtgatggaggcggcggtggtggcgcgcccggacgagaaatggggc
gagacaccctgcgcctttgtcgagctgaagccggggcaatcggtggaggccgccgacctg
atcgcgcattgccgggcgaacatggcacatttcaaggcacccaagacggtggtgtttggc
gaattgcccaagacctcgaccggcaagatacagaaattcctgctgcgcgagcgtgcccgc
gcgctctga
Ruegeria pomeroyi: SPO2045
Help
Entry
SPO2045 CDS
T00215
Symbol
dmdB
Name
(GenBank) 3-methylmercaptopropionyl-CoA ligase
KO
K20034
3-(methylthio)propionyl---CoA ligase [EC:
6.2.1.44
]
Organism
sil
Ruegeria pomeroyi
Pathway
sil00920
Sulfur metabolism
sil01100
Metabolic pathways
sil01120
Microbial metabolism in diverse environments
Module
sil_M00990
Dimethylsulfoniopropionate (DMSP) degradation, demethylation pathway, DMSP => methanethiol
Brite
KEGG Orthology (KO) [BR:
sil00001
]
09100 Metabolism
09102 Energy metabolism
00920 Sulfur metabolism
SPO2045 (dmdB)
Enzymes [BR:
sil01000
]
6. Ligases
6.2 Forming carbon-sulfur bonds
6.2.1 Acid-thiol ligases
6.2.1.44 3-(methylthio)propionyl---CoA ligase
SPO2045 (dmdB)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
AMP-binding
AMP-binding_C
Motif
Other DBs
NCBI-ProteinID:
AAV95316
UniProt:
Q5LRT0
LinkDB
All DBs
Position
complement(2174586..2176205)
Genome browser
AA seq
539 aa
AA seq
DB search
MLGQMMYQPLLISSLIDHAARYHGEAQIWSVSTEGGVEETNWAGIADNARRLGSVLTDAG
LAPQSRVATLAWNNRRHLEIYYGVSGAGFVLHTINPRLFPEQLVYILNHAEDRILFFDAT
FLPLVEGIRPHLTTVERLVLMGPRDEAAAARIEGLEFYDEFVATGDAGFDWPDLDERTAS
SLCYTSGTTGNPKGVLYSHRSTVLHSFGSNTRDCIGFSARDVVMPVVPMFHVNAWGTPYA
CAMSGSCMVLPGPDLHGEALVGLIDRYRVTIALGVPTIWQGLLATARAKGSTLESLTRTV
IGGAACPPSMIAEFRDRYGVDTVHAWGMSEMSPLGTTNQPLAKHGALPIEAQHKLRENQG
RPPYGVELKIVDDDGNTLPNDGQTQGDLMVRGHWVLDSYFQLQDQPILSDGWFATGDVAT
LDRDGYMTIRDRSKDIIKSGGEWISSVELENIAVAHPKLATAAVIGVPHPKWDERPLLVA
VKAEGETPDEAELLAFFDGKIAKWQVPDRVVFVEALPLNATGKVLKRTLREQFRDVLTG
NT seq
1620 nt
NT seq
+upstream
nt +downstream
nt
atgcttggacagatgatgtatcagccgctgctgatctcgtcgctgatagatcacgccgcg
cgctatcacggcgaggcgcagatctggtcggtcagcaccgaaggcggggtcgaggagacc
aactgggcggggatcgccgacaatgcccgccgcctgggctcggtcctgaccgatgcaggg
ctggcgccgcaatcgcgtgttgccacgctggcctggaacaaccggcggcatctggagatc
tattacggggtgtcgggcgccggctttgttctgcacacgatcaacccgcgcctgttcccc
gaacagctggtctatatcctcaaccatgccgaggatcgcatcctgttcttcgatgccact
ttcctgccgctggtcgaggggattcgcccgcatctgaccaccgttgaacggctggttctg
atggggccgcgcgacgaggcggcggcagcgcgcatcgaggggctggaattctacgacgag
tttgtcgccaccggggatgcgggttttgactggcccgatcttgacgagcgcacggcttcg
agcctgtgctatacctcggggaccacgggcaatcccaagggcgtactttattcgcaccgt
tccaccgtgctgcacagtttcggctcgaacacccgcgattgcatcggtttttcggcgcgc
gatgtggtgatgccggtggtgccgatgttccatgtcaacgcctggggcacgccctatgcc
tgtgcgatgtctggatcgtgcatggtgctgccggggcccgatctgcatggcgaggcgctg
gttggtctgatcgaccgctatcgggtcaccatcgcgctgggggtgccgaccatctggcag
gggctgttggccaccgcccgcgccaagggcagcacgctggaaagcctgacgcgcacggtg
atcggcggcgcggcctgtccgccctcgatgatcgccgagttccgcgaccgctatggtgtc
gataccgtccatgcctggggcatgtccgagatgagcccgctgggcaccaccaaccagccg
ctggccaagcacggcgccctgccgatcgaggcgcagcacaagctgcgcgagaaccagggc
cgcccgccctatggggtggagctgaagatcgtcgatgacgatggcaacacgttgcccaat
gacggtcagacccagggcgaccttatggtgcgcggccattgggtgctggacagctatttc
cagttgcaggaccagccgatcctgtcggatggctggttcgccaccggcgatgtggcgacg
ctggaccgcgacggctatatgacgatccgggaccggtccaaggatatcatcaagtcgggc
ggcgaatggatcagctcggtcgagctggagaatatcgcggttgcgcatccgaaactggcc
accgccgcggtgatcggggtgccgcatccgaaatgggatgaacgcccgcttttggtggcg
gtcaaggccgagggcgagacgcctgacgaggcggagttgctggcgttctttgacggcaag
atcgcgaaatggcaggtgcctgaccgggtcgtgtttgtcgaggcgctgccgctgaatgcc
accggcaaggtgctgaaacggacccttcgcgaacagttcagggatgttctgaccgggtga
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integrated database retrieval system
