Ruegeria pomeroyi: SPO0887
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Entry
SPO0887 CDS
T00215
Symbol
groEL
Name
(GenBank) chaperonin, 60 kDa
KO
K04077
chaperonin GroEL [EC:
5.6.1.7
]
Organism
sil
Ruegeria pomeroyi
Pathway
sil03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
sil00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
SPO0887 (groEL)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
sil03019
]
SPO0887 (groEL)
03110 Chaperones and folding catalysts [BR:
sil03110
]
SPO0887 (groEL)
03029 Mitochondrial biogenesis [BR:
sil03029
]
SPO0887 (groEL)
09183 Protein families: signaling and cellular processes
04147 Exosome [BR:
sil04147
]
SPO0887 (groEL)
Enzymes [BR:
sil01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.1 Enzymes altering polypeptide conformation or assembly
5.6.1.7 chaperonin ATPase
SPO0887 (groEL)
Messenger RNA biogenesis [BR:
sil03019
]
Prokaryotic type
Bacterial mRNA degradation factors
Other RNA degradation factors
Chaperones
SPO0887 (groEL)
Chaperones and folding catalysts [BR:
sil03110
]
Heat shock proteins
HSP60 / Chaperonin
SPO0887 (groEL)
Mitochondrial biogenesis [BR:
sil03029
]
Mitochondrial protein import machinery
Matrix
Other matrix factors
SPO0887 (groEL)
Exosome [BR:
sil04147
]
Exosomal proteins
Exosomal proteins of haemopoietic cells (B-cell, T-cell, DC-cell, reticulocyte, and mast cell)
SPO0887 (groEL)
Exosomal proteins of other body fluids (saliva and urine)
SPO0887 (groEL)
Exosomal proteins of breast cancer cells
SPO0887 (groEL)
Exosomal proteins of colorectal cancer cells
SPO0887 (groEL)
Exosomal proteins of bladder cancer cells
SPO0887 (groEL)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Cpn60_TCP1
Motif
Other DBs
NCBI-ProteinID:
AAV94192
UniProt:
Q5LV15
LinkDB
All DBs
Position
943274..944914
Genome browser
AA seq
546 aa
AA seq
DB search
MAAKDVKFNTEARNKMLKGVNILADAVKVTLGPKGRNVVLDKSFGAPRITKDGVSVAKEI
ELEDKFENMGAQMVKEVASRTNDEAGDGTTTATVLAQAIVREGMKSVAAGMNPMDLKRGI
DLATAKVVEAIKAASRPVNDSAEVAQVGTISANGESEIGRQIAEAMQKVGNEGVITVEEN
KGLETETDVVEGMQFDRGYLSPYFVTNADKMIAELEDCMILLHEKKLSSLQPMVPLLEQV
IQSQKPLLIIAEDVEGEALATLVVNKLRGGLKIAAVKAPGFGDRRKAMLQDIAILTGGQV
ISEDLGMKLESVTMDMLGTAKKISITKDETTIVDGAGEKAEIEARVAQIRTQIEETTSDY
DREKLQERVAKLAGGVAVIRVGGMTEVEVKERKDRVDDALNATRAAVQEGVVVGGGVALV
QAGKVLADLEGANADQTAGINIVRKAIEAPLRQIAENAGVDGAVVAGKVRESGDASFGFN
AQTEEYGDMFKFGVIDPAKVVRTALEDASSVAGLLITTEAMVADKPQKDAPAGGGMPDMG
GMGGMM
NT seq
1641 nt
NT seq
+upstream
nt +downstream
nt
atggctgctaaggacgtcaagttcaataccgaagcccgcaacaagatgctcaagggcgtc
aacatcctggccgacgcggtcaaggtgaccctgggccccaaaggccgcaacgtggttctg
gacaagagcttcggcgcgccccgcatcaccaaggacggtgtgtcggtcgccaaggaaatc
gaactggaagacaagttcgagaacatgggcgcgcagatggtgaaagaagtcgccagccgc
accaatgacgaggccggcgacggcaccaccaccgccaccgtgctggcccaggccatcgtg
cgcgaaggcatgaaatcggttgccgccggcatgaacccgatggatctgaagcgcggcatc
gacctggccaccgccaaggttgtcgaggccattaaggcagcctcgcgccccgtcaacgac
agcgccgaagtggcgcaggtcggcaccatctcggccaacggcgaatccgaaatcggccgc
cagatcgccgaagccatgcagaaggtcggcaacgagggtgtcatcaccgtcgaagagaac
aagggcctggaaaccgagaccgacgtggtcgagggcatgcagttcgaccgtggctacctg
tcgccctatttcgtcaccaacgcagacaagatgatcgcagaactcgaagactgcatgatc
ctgctgcacgaaaagaaactgtcctcgctgcagccgatggttccgctgctcgagcaggtg
atccagtcgcaaaagccgctgctgatcatcgccgaggatgtcgaaggcgaagcgctggcc
accctcgtggtgaacaagctgcgcggcggcctgaaaatcgcagccgtcaaggcaccgggc
ttcggcgatcgccgcaaggccatgctgcaggacatcgccatcctgaccggcggtcaggtg
atcagcgaagacctgggcatgaagctcgagtccgtcaccatggacatgctgggcaccgcc
aagaaaatctcgatcaccaaggacgagaccaccatcgttgatggcgcaggcgagaaggcc
gagatcgaagcacgtgttgcccagatccgcacccagatcgaagagaccaccagcgactac
gaccgtgaaaagctgcaagagcgcgtggccaagctggccggcggtgttgccgtgatccgc
gtcggtggcatgaccgaagtcgaagtgaaagagcgcaaggaccgcgtcgatgacgccctg
aacgccacccgcgcagccgtgcaggaaggtgttgttgtgggcggcggtgtcgctctggtt
caggcaggcaaggttctggccgacctggaaggcgcaaatgccgaccagaccgccggtatc
aacatcgtgcgcaaggccatcgaagcgccgctgcgccagatcgccgagaacgcaggcgtc
gacggcgccgtggttgccggcaaggtgcgcgaatcgggcgatgcctcgttcggcttcaac
gcgcagaccgaagaatatggcgacatgttcaagttcggcgtgatcgacccggccaaggtt
gtccgcaccgctctggaggatgcgtcctcggttgccggtctgctgatcaccaccgaagct
atggttgccgacaagccgcagaaagacgcccccgcaggcggcggcatgcccgacatgggc
ggcatgggcggcatgatgtaa
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