Ruegeria pomeroyi: SPO1732
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Entry
SPO1732 CDS
T00215
Symbol
recJ
Name
(GenBank) single-stranded-DNA-specific exonuclease RecJ
KO
K07462
single-stranded-DNA-specific exonuclease [EC:3.1.-.-]
Organism
sil
Ruegeria pomeroyi
Pathway
sil03410
Base excision repair
sil03430
Mismatch repair
sil03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
sil00001
]
09120 Genetic Information Processing
09124 Replication and repair
03410 Base excision repair
SPO1732 (recJ)
03430 Mismatch repair
SPO1732 (recJ)
03440 Homologous recombination
SPO1732 (recJ)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
sil03400
]
SPO1732 (recJ)
DNA repair and recombination proteins [BR:
sil03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
RecJ
SPO1732 (recJ)
DSBR (double strand breaks repair)
HR (homologous recombination)
RecFOR pathway proteins
SPO1732 (recJ)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
SPO1732 (recJ)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DHH
RecJ_OB
DHHA1
Prok-RING_1
Motif
Other DBs
NCBI-ProteinID:
AAV95012
UniProt:
Q5LSN5
LinkDB
All DBs
Position
complement(1849852..1851507)
Genome browser
AA seq
551 aa
AA seq
DB search
MRQQTDLPQAVCQVLARRGVPAIEARGFLDPKLKELLPDPRKLKDMEIAAARFLAAVAGR
QRIAVFADYDVDGGSSAALLICWLREMGQTATLYVPDRIDEGYGPNEVAMADLARGHDLI
VCVDCGTLSHGPIAAAKGADVIVLDHHLGAETLPECVAVVNPNRQDESGDLGYFCAAGVV
FLMLVEAGRQLRARGQRGPDLMAMLDLVALATVADVAPLIEANRALVRQGLKVMAQRQRP
GLVALADIARMDAMPNTYHLGFLLGPRVNAGGRIGQADLGARLLSTDSMSEAQALAERLD
LLNTERREIEAAVRAAALDQAETRGLEAPLVWAAGEGWHPGVVGIVASRLKESANRPAIV
IGFDGDEGKGSGRSVAGVDLGASIQRLAAEGLLVKGGGHKMAAGLTVLRDRLEPAMERLS
ELLAKQGAGQGGPADLRLDGVLMPGAATVELLEQIELAGPYGASAPAPRFALPDLQIRFA
KRVGASHLKLSLADGMGGGLDAILFGAFDGEIGPILENHGGARFHFAGRLEINSWGGRQS
VQLRVDDVARA
NT seq
1656 nt
NT seq
+upstream
nt +downstream
nt
atgcggcagcagaccgacctgccgcaggcagtgtgtcaggtgctggcgcgacgcggggtt
ccggcaatcgaggcgcgcggctttcttgaccccaagctgaaggagctgctgcccgatccg
cgcaagctgaaggatatggaaatcgcggcggcgcggttcctggccgcggtggccgggcgt
cagcggatcgcggtctttgccgattacgacgtggatggcggcagttcggcggcgctgctg
atctgctggctgcgtgagatggggcaaaccgcaacgctttacgtgcccgaccgcatcgac
gagggctatggccccaacgaggtggcgatggcggacttggcccggggtcacgacctgatc
gtctgtgtcgattgcggcacgctgagccatggcccgatcgccgccgccaagggcgccgat
gtgatcgtgctggaccaccatttgggggccgagaccctgcccgaatgtgtggcggtggtg
aaccccaaccggcaggacgagagcggcgatctgggctatttctgcgccgccggcgtggtg
ttcctgatgctggtcgaggcgggccgccagctgcgcgcacgcggacaacgcggccccgac
ctgatggcgatgctcgacctggtggcgctggccaccgtagccgatgtggcgccgttgatc
gaggcgaaccgggcgctggtgcgccaggggctgaaggtgatggcgcagcggcagcggccc
gggctggtggcgctggccgatatcgcgcgcatggacgccatgcccaacacctatcacctg
ggctttctactgggcccgcgcgtcaatgccgggggccggatcgggcaggccgatctgggc
gcccgcctgctcagcaccgacagcatgagcgaggcgcaggcgctggccgaacggctggat
ctgctcaacaccgagcggcgcgagatcgaggccgcggtgcgcgccgcggccctcgatcag
gccgagacccgcgggctggaggcgccgctggtctgggcggcgggcgagggctggcatccg
ggcgttgtcggcatcgtcgcctcgcgcctgaaagaaagcgccaaccggcccgccatcgtg
atcggttttgacggcgacgagggcaaaggctcgggccggtcggtggccggggtcgatctg
ggcgcgtcgatccagcggctggcggccgaggggttgctggtcaagggcggcggccacaag
atggccgccgggctgacggtgctgcgcgaccggctggaaccggcgatggaacggctgtcc
gaactgctggccaaacagggcgccgggcaaggcggaccggcggatctgcggctggacggg
gtcctgatgccgggcgcggccacggtcgagctgctggaacagatcgaactggccggcccc
tatggcgccagcgcccctgccccgcgttttgccctgcccgacctgcagatccgctttgcc
aagcgcgtcggcgcgtcgcatctgaaactgtcgctggccgacgggatgggcggcgggctg
gacgcgatcctgtttggtgcctttgatggagagatcggcccgatactggaaaaccacggc
ggtgcccggttccatttcgccggccggctcgagatcaactcctggggcggcaggcagagc
gtgcagctgcgcgtcgatgacgtcgcgcgcgcctga
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