Ruegeria pomeroyi: SPO1750
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Entry
SPO1750 CDS
T00215
Symbol
rpoD
Name
(GenBank) RNA polymerase sigma-70 factor RpoD
KO
K03086
RNA polymerase primary sigma factor
Organism
sil
Ruegeria pomeroyi
Pathway
sil02040
Flagellar assembly
Brite
KEGG Orthology (KO) [BR:
sil00001
]
09140 Cellular Processes
09142 Cell motility
02040 Flagellar assembly
SPO1750 (rpoD)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
sil03021
]
SPO1750 (rpoD)
Transcription machinery [BR:
sil03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Sigma factors
SPO1750 (rpoD)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Sigma70_ner
Sigma70_r3
Sigma70_r2
Sigma70_r1_1
Sigma70_r4
Sigma70_r1_2
Motif
Other DBs
NCBI-ProteinID:
AAV95030
UniProt:
Q5LSL7
LinkDB
All DBs
Position
1870216..1872198
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AA seq
660 aa
AA seq
DB search
MAAKDTAEDQKPEDQEDEVSLDMSQAQVKKMIAEAREKGYITYDQLNQVLPPDQVSSEQI
EDVMSMLSEMGINIIEDEEAEEEEQKGSTDLITTESNREVALAGAQAEKLDRTDDPVRMY
LREMGSVELLSREGEIAIAKRIEAGRNTMIAGLCESPLTFQAITIWHDELLSEDILLRDV
IDLEATFGNQLDDEDDEPVVATSAVQAVKPQREETPEYDADGNPIVTEDDEDEDDQANMS
LAAMEAALKDKVLITLERISSDYAQLSEMQDSRISATLNEDGSFSAHDEATYQSLRSEIV
LLVNELHLHNNRIEALIDQLYGINKRVMSIDSSMVKLADQARINRREFIDAYRGRELDPN
WLAEMAEKPGRGWQMFIERSSDKVEELRADMAQVGQYVGLDISEFRRIVQQVQKGEKEAR
QAKKEMVEANLRLVISIAKKYTNRGLQFLDLIQEGNIGLMKAVDKFEYRRGYKFSTYATW
WIRQAITRSIADQARTIRIPVHMIETINKLVRTGRQMLHEIGREPTPEELAEKLQMPLEK
VRKVMKIAKEPISLETPIGDEEDSQLGDFIEDKNAVLPLDSAIQENLKETTTRVLASLTP
REERVLRMRFGIGMNTDHTLEEVGQQFSVTRERIRQIEAKALRKLKHPSRSRKLRSFLDQ
NT seq
1983 nt
NT seq
+upstream
nt +downstream
nt
atggccgccaaggacaccgccgaagaccagaagcccgaagaccaggaagacgaagtctcg
ctcgacatgagccaggcccaagtcaagaagatgatcgccgaggcccgtgaaaagggctat
atcacctacgatcagctcaaccaggttctgccgcccgatcaggtgagttccgagcaaatc
gaggatgtgatgtcgatgctctccgagatgggcatcaatatcatcgaggatgaagaggcc
gaagaggaagagcagaagggctcgaccgacctcatcaccaccgaaagcaaccgcgaggtt
gcgctggctggcgcccaggcagaaaagctcgaccgtaccgatgacccggtgcgcatgtat
ctgcgcgagatgggttcggtcgaactgctcagccgcgagggcgagatcgccatcgccaag
cggatcgaggccgggcgcaacacgatgatcgccgggctgtgcgaaagcccgctgaccttt
caggcgatcaccatctggcatgacgaacttctgtccgaggacatcctgctgcgcgacgtg
atcgacctggaggccaccttcggcaaccagctggatgacgaagatgacgagccggtggtc
gcgaccagcgcggtgcaggcggtcaagccgcagcgcgaggagaccccggaatacgacgcc
gacggcaacccgatcgtcaccgaggatgacgaggacgaggacgatcaggccaacatgtcg
ctggccgcgatggaggccgcgctcaaggacaaggtgctgatcacgctcgagcggatctcg
tccgattacgcacagctgagcgagatgcaggacagccgtatctcggccacgctgaacgaa
gacggctcgttcagcgcgcatgacgaggcgacctatcagtcgctgcgctcggaaatcgtg
ctgctggtgaacgaactgcacctgcacaacaaccggatcgaggcgctgatcgaccagctc
tacggcatcaacaagcgggtgatgtcgatcgacagttcgatggtcaagctggccgaccag
gcgcgcatcaaccggcgcgagttcatcgacgcctatcgcgggcgcgaactggacccgaac
tggctggccgaaatggccgaaaagcccggtcgcggctggcagatgttcatcgaacgctcg
tccgacaaggttgaggagctgcgcgccgacatggcccaggtgggtcagtatgtgggtctg
gatatctctgaattccgccgcatcgtgcagcaggtccagaagggcgagaaagaggcccgt
caggcgaaaaaggaaatggtcgaggccaacctgcgcctggtgatctcgatcgccaagaaa
tacaccaaccgcgggttgcagttcctcgacctgatccaggagggcaacatcggcctgatg
aaggcggtggacaagttcgagtatcgtcgcggctacaagttctcgacctacgcgacatgg
tggatccgccaggcgatcacccgctccatcgccgaccaggcccgcacgatccgcatccca
gtccatatgatcgagacgatcaacaagctggtgcgcaccggtcgccagatgctgcacgag
atcggccgcgaaccgacgccggaagaactggccgaaaaactgcagatgccgctggaaaag
gtccgcaaggtgatgaagatcgccaaggagccgatttcgctggaaaccccgatcggggac
gaggaagacagccagctgggcgatttcatcgaggacaagaatgccgtgctgccgctcgac
agtgccattcaggagaacctcaaggaaaccacgacccgcgtgctggcctcgctcaccccg
cgcgaggaacgtgttctgcggatgcggttcggcatcggtatgaacaccgaccacacgctg
gaggaagtgggccagcagttcagcgttacccgcgagcgtatccgccagattgaggccaag
gcgctcaggaaactgaaacaccccagccgctcgcgcaagctgcgcagcttcctggaccag
tga
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