Ruegeria pomeroyi: SPO1807
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Entry
SPO1807 CDS
T00215
Name
(GenBank) exonuclease, DNA polymerase III, epsilon subunit family
KO
K02342
DNA polymerase III subunit epsilon [EC:
2.7.7.7
]
Organism
sil
Ruegeria pomeroyi
Pathway
sil03030
DNA replication
sil03430
Mismatch repair
sil03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
sil00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
SPO1807
03430 Mismatch repair
SPO1807
03440 Homologous recombination
SPO1807
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
sil03032
]
SPO1807
03400 DNA repair and recombination proteins [BR:
sil03400
]
SPO1807
Enzymes [BR:
sil01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.7 DNA-directed DNA polymerase
SPO1807
DNA replication proteins [BR:
sil03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
DNA polymerase III holoenzyme
SPO1807
DNA repair and recombination proteins [BR:
sil03400
]
Prokaryotic type
SSBR (single strand breaks repair)
MMR (mismatch excision repair)
DNA polymerase III holoenzyme
SPO1807
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNase_T
RNase_H_2
DEDDh_C
DNA_pol_A_exo1
CyanoTRADDas_TM
Motif
Other DBs
NCBI-ProteinID:
AAV95086
UniProt:
Q5LSG1
LinkDB
All DBs
Position
complement(1923540..1924952)
Genome browser
AA seq
470 aa
AA seq
DB search
MLTGLSLRLRIFLFFCLLAAGGLAVVLGALWLAYSRAGTPELLDAFVLAALSAGFGLLAL
VAGVWLLFDENIAKPIERLSASMRARAHAGVAGDLDLHAARYLGDLAPAAAGLAGQLSSS
AMDTAAAVASETAHLAAETARLTALLTEIPVAMLLANPAHQIVLYDGQAAGVLAQIAHPR
LNASLFDYFQRAGLERAYARLVKTGLEQSCTLTGTDGAQSYQARMKPLGDAPGYMLILDE
ASSRIAPEAARPLVYDFDLLNQPAEAALEARALDSLVFAVFDTETTGLLPHKDEIVQIGA
VRVVKGRIVPGERIDQLVDPGRPIPPASTRVHGVSDAMVAGAPDIVAAARQFHQFARDAV
IVAHNAPFDIAFLRRHGPRCGLDWDHPILDTVLLSAVLFGASETHTLDALCDRLGVTIPA
PLRHTALGDAQATAEVLCRMLPMLRARGLDTFGAVISETRKHGRLIEDLN
NT seq
1413 nt
NT seq
+upstream
nt +downstream
nt
atgctgaccggtttgagcctgcgcctgcgcatctttctcttcttctgcctgctggcggcg
ggcgggctggcggtggtgctgggcgcactctggctggcctattcccgcgcgggcactccc
gaattgctcgatgcctttgtgctggcggcgctgagcgcgggcttcggcctgctggcgctg
gtggccggcgtctggctgctgttcgacgaaaacatcgccaaaccgatcgagcgtctgtcg
gccagcatgcgcgcccgcgcccatgcgggcgtggcgggcgatctcgacctgcacgcggcc
cgctatcttggcgatctggcgcccgctgccgccgggcttgcgggccagctcagcagcagc
gccatggacactgccgccgccgtggcgtcagagaccgcgcatctggccgccgagaccgcg
cggctgaccgcgctgttgaccgagatcccggtcgccatgctgctggccaaccccgcccat
cagatcgtgctttatgacgggcaggcggcgggcgttctggcgcagatagcccatccccgt
ctcaacgcctcgctgtttgactatttccagcgcgccgggcttgaacgcgcctatgcgcgg
ctggtcaagaccgggctggagcaaagctgcaccctgaccggcaccgacggcgcgcaaagc
tatcaggcgcgaatgaaaccgctgggtgacgcgccgggctacatgctgatcctcgacgag
gccagcagccgcatcgcgcccgaggcggcgcgcccgctggtctatgatttcgaccttctc
aaccagcccgccgaggcggcgctggaggcgcgcgcactggacagcctggtctttgccgtc
ttcgacaccgagaccaccgggctcctgccgcacaaggacgagatcgtgcagatcggcgcg
gtgcgggtggtcaaggggcggatcgtgccgggtgagcggatcgaccagctggtcgatccc
ggccgcccgatcccgcccgcctcgacccgggtgcatggtgtctccgacgcgatggtcgcg
ggcgccccggatatcgtggccgccgcgcgccagttccaccagttcgcccgcgacgcggtg
atcgtggcccataacgcgcccttcgacattgccttcctgcgccgtcacgggccgcgttgc
gggctggactgggatcacccgatcctcgacacggtgctgctctcggcggtgctgttcggc
gccagcgagacccacacactggacgcgctttgcgaccggctgggtgtcaccattcccgcg
cctttgcgccataccgccctgggggatgcccaggccaccgccgaggtgctgtgccggatg
ctgccgatgctgcgcgcgcgcgggctcgacacgtttggcgcggtgatcagcgaaacccgc
aaacacgggcggttgatcgaagatctgaactga
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