Ruegeria pomeroyi: SPO1893
Help
Entry
SPO1893 CDS
T00215
Name
(GenBank) ribonuclease, Rne/Rng family
KO
K08300
ribonuclease E [EC:
3.1.26.12
]
Organism
sil
Ruegeria pomeroyi
Pathway
sil03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
sil00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
SPO1893
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
sil03019
]
SPO1893
03009 Ribosome biogenesis [BR:
sil03009
]
SPO1893
Enzymes [BR:
sil01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.26 Endoribonucleases producing 5'-phosphomonoesters
3.1.26.12 ribonuclease E
SPO1893
Messenger RNA biogenesis [BR:
sil03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
SPO1893
Ribosome biogenesis [BR:
sil03009
]
Prokaryotic type
rRNA processing factors
SPO1893
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
RNase_E_G
RNase_E_G_Thio
S1
DnaJ_CXXCXGXG
Motif
Other DBs
NCBI-ProteinID:
AAV95172
UniProt:
Q5LS75
LinkDB
All DBs
Position
2017823..2020804
Genome browser
AA seq
993 aa
AA seq
DB search
MAKKMLIDATHAEETRVVVVDGNKVEEFDFESENKRQLAGNIYLAKVTRVEPSLQAAFVD
YGGNRHGFLAFSEIHPDYYQIPVADRQALMEEERAYAEAQKARDEDEEGGKSRSKPKRSR
SRSRSKAESLRSSDPVETMDVSETEISGMETIDLDEGDDRDDIDLIEGSSPMERVAETPV
EEPEDGADETVDQTADQAADEAADAAEDTDTTETDGETAQDNTEDRADEADDEDEDDGED
APRPRRGKADAASKDDSIESIAEEDDAEDLRPARKPRARKYKIQEVVKVRQVMLVQVVKE
ERGNKGAALTTYLSLAGRYCVLMPNTARGGGISRKITNAVDRKKLKEIAAEMDVPQGAGL
IVRTAGAKRTKAEIKRDYEYLQRMWEQIRELTLKSIAPAKIYEEGDLIKRSIRDLYNRDI
DEVLVEGEGGYRIAKDFMKMIMPSHAKNVQRYEDQLPLFARFQVESYLNSMFNPTVQLKS
GGYIVIGVTEALVAIDVNSGRATKEGSIEETALKTNLEAAEEVARQLRLRDLAGLIVIDF
IDMDERKNNAAVEKRMKDKLKTDRARIQVGRISGFGLMEMSRQRLRPGMIEATTQPCPSC
HGTGLIRSDDNMALSILRQIEEEGTRRRSREVLVRCPVGIANYLMNQKREHIAQIEARYG
LSVRIEGDAHLVSPDFSLEKFKTATRSVPQVQAPVVSVDSRLMDQIDADEAFEEEDEAEE
VRTEPRGETAGEGDGDGKPKRKRRRRRRRKNGGNGGEDSTADGDSGEIGDEAAEDAADAA
PEAAEDAAVTEAEAEPAAAEGGEAEVEAVAEAEAEAEAPAKTPRKRTRTRKKPVKAEAAA
EAPADAMASADVPAVEGDAGETPAEADAEAEAAPVKKTPKPRKPRSRSKKAEAPAEAAEA
SVAAEAPAAESVEAEPATAVEATAPEAVAETVVDEAAQPAEDAIAAPAEPEAAPEPEVAQ
AEPAAPEMAVAEAEAEPDGPPKPKRRGWWSLGQ
NT seq
2982 nt
NT seq
+upstream
nt +downstream
nt
atggcaaagaagatgctcattgatgccacccacgcggaggaaacccgcgtcgtggtggtc
gacggcaacaaggtcgaggaattcgattttgagtccgaaaacaaacgccagctagctggc
aatatctatctggcaaaggtcacccgggtcgaaccctcgctccaggcggcatttgtcgat
tacggcggcaaccgtcacgggttcctcgccttctcggaaattcatcccgactactaccag
atccccgtcgccgaccgtcaggcgctgatggaggaagagcgcgcctatgccgaggcgcag
aaggcgcgcgacgaggatgaggaaggcggtaaatcccgctccaaacccaagcgcagccgc
agccgctcgcgcagcaaggccgaaagcctgcgctcctccgatccggtcgagaccatggat
gtgagcgagaccgagatcagcggcatggagacgatcgacctcgacgagggcgatgatcgc
gacgatatcgacctgatcgaaggcagctcgccgatggagcgcgtcgccgagacgccagtg
gaagagcccgaggacggcgccgatgagacggtggatcagacggcggatcaggcggcggat
gaggctgctgatgcggccgaggacaccgacacgaccgaaactgacggtgaaaccgcgcag
gacaacaccgaggatcgcgccgacgaggccgatgacgaggatgaggatgacggcgaagac
gccccgcgcccccggcgcggcaaggccgatgccgcctccaaggatgacagcatcgaatcc
atcgccgaagaggacgatgccgaggatctgcgcccggcccgcaagccgcgtgcgcgcaag
tacaagatccaggaagtggtcaaggtgcgccaggtgatgctggtgcaggtcgtgaaggaa
gagcgcggcaacaagggcgcggcgctgaccacctatctcagcctcgcgggccgctattgc
gtcctgatgcccaacaccgcgcgcggtggcggcatcagccgcaagatcaccaatgcggtc
gaccgcaagaaactcaaagagatcgccgccgagatggacgtgccccagggcgcgggcctg
atcgtgcgcacggcgggcgccaagcgcaccaaggccgagatcaagcgcgactatgaatac
ctccagcgcatgtgggagcagatccgcgaactgacgctgaaatccatcgcgccggccaag
atctatgaggaaggcgacctgatcaaacgctcgatccgcgacctctataatcgcgacatc
gacgaggttctggtcgagggcgaaggcggttaccgcatcgccaaggacttcatgaagatg
atcatgccgagccacgccaagaacgtgcagcggtatgaggatcagctgccgctgttcgcg
cgcttccaggtggaaagctatctgaactcgatgttcaacccgacggtgcagttgaaatcc
ggtggttacatcgtgatcggcgtgaccgaggcactggtggccatcgacgtgaactcaggc
cgggccaccaaggaaggctcgatcgaggaaaccgcgctcaagaccaatctcgaggccgcc
gaagaggtggcccgccagctgcgcctgcgcgacctggccggtctgatcgtgatcgacttc
atcgacatggacgagcgcaagaacaatgccgccgtcgagaaacggatgaaggacaagctg
aagaccgaccgtgcccgcatccaggtgggccggatctcgggctttggcctgatggaaatg
tcgcgtcagcgcctgcgccccggcatgatcgaggccaccacccagccgtgcccctcgtgc
cacggcaccggccttatccgctcggacgacaacatggcgctgagcatcctgcgccagatc
gaggaggaaggcacccgccgccgctcgcgcgaggtgctggtgcgctgcccggtgggcatc
gccaactacctgatgaaccagaaacgcgaacatatcgcgcagatcgaggcgcgctatggt
ctgagcgtgcgcatcgagggcgatgcgcatctggtcagccccgatttcagccttgagaag
ttcaagaccgccacccgctcggtgcctcaggtgcaggcgccggtggtttcggtggactcg
cggctgatggaccagatcgacgccgacgaggccttcgaggaagaggacgaggccgaagag
gtccggaccgaaccccgcggcgagaccgctggcgaaggggacggcgacggcaagcccaag
cggaaacggcgtcggcggcgtcggcgcaagaacggcggcaatggtggcgaggacagcacg
gccgacggcgacagtggcgagatcggtgacgaggcggccgaggatgcggcggatgccgcg
cccgaggcagccgaagacgcagccgtgaccgaggccgaggcggaacccgcagcggccgag
ggcggcgaagccgaggttgaagccgtggctgaggctgaggctgaagctgaagctccggcc
aagaccccgagaaagcgcacccgcacgcgcaagaaaccggtcaaggccgaagcggctgcc
gaggcgcctgccgacgcgatggcaagcgcggatgtccctgccgttgagggcgacgctggc
gaaaccccggccgaggcggatgccgaggctgaggccgcgccggtcaagaaaacgcccaag
ccgcgcaaaccgcgcagccgcagcaaaaaggccgaggcgcccgccgaggctgccgaggca
agcgtagcggccgaggccccggcagcggaaagcgtcgaagccgagcctgcaaccgccgtc
gaggcaacagcgcccgaggcagtggccgagacggttgtggacgaggcggcgcagcccgcc
gaggatgccatagcggccccggcagagccggaagcggcgcctgaaccggaagtggctcag
gcagagccggcagcgcccgagatggcggttgccgaggccgaggcggaacccgatggcccg
ccgaagccgaaacggcgcggctggtggtcgctgggtcaataa
DBGET
integrated database retrieval system
