Ruegeria pomeroyi: SPO1929
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Entry
SPO1929 CDS
T00215
Name
(GenBank) peptidoglycan binding protein, putative
KO
K21470
L,D-transpeptidase YcbB
Organism
sil
Ruegeria pomeroyi
Brite
KEGG Orthology (KO) [BR:
sil00001
]
09180 Brite Hierarchies
09181 Protein families: metabolism
01002 Peptidases and inhibitors [BR:
sil01002
]
SPO1929
01011 Peptidoglycan biosynthesis and degradation proteins [BR:
sil01011
]
SPO1929
Peptidases and inhibitors [BR:
sil01002
]
Cysteine peptidases
Family C82
SPO1929
Peptidoglycan biosynthesis and degradation proteins [BR:
sil01011
]
Peptidoglycan biosynthesis and degradation
Transpeptidase
SPO1929
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Scaffold
YkuD
PG_binding_1
Motif
Other DBs
NCBI-ProteinID:
AAV95205
UniProt:
Q5LS41
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All DBs
Position
2056314..2057927
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AA seq
537 aa
AA seq
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MPHLKRPAIRLTLTALLLAGVAVLASPGTADAQVTAYKQAVAEASYGEDGVAAFYRKNGY
QPVWTGEGAEFTARRIALIEALSMADVHGLPAGRYDINGLKAQMAAARTTRDMGLVEVAL
SREFARFARDLQTGLLTPSQIDDGMVRVVERRGAEAYLSELQAAEPGRYMRMLAPNTSQY
RALLKLKLDLEQALATGGWGPTVAGGKLAPGDGGPRVVALRNRLIAMGFMDRSAVASYDG
TLQKAVQAFQLAHGLEADGVAGDGTLDEINKSVADRLKSVIVALERERWLPRDRGERHIL
VNQTDFTAKIVDHGRVTFETRSVIGKNVSDRRSPEFSDEMEHMVINPSWYVPRSIITKEY
LPKLRANPNAVRHLEITDSRGRQVNRGAVDFSQFSSRSFPFAMRQPPGKSNALGLVKFMF
PNKYNIYLHDTPQKDLFAREVRAYSHGCIRLAQPFEFAYALLALQEADPKSFFHNVLNTG
RETKVDLERHVPVHIIYRTAVVDDRGQAGYRRDVYGRDAKIWEALSRAGVVLTAVQG
NT seq
1614 nt
NT seq
+upstream
nt +downstream
nt
atgccgcatctcaaacgccctgccattcgtctcacgctgacagccctgctgcttgcaggt
gtggcggtgttggcgtcacccggtacggcagatgcgcaggttaccgcctataaacaggcg
gttgccgaggcgagttatggtgaagacggggtcgccgccttttaccgcaagaacggctat
cagccggtctggacgggcgaaggggccgaattcaccgcccgccgcattgccctgatcgag
gcactgagcatggccgatgtgcacggcctgcccgcggggcgttatgacatcaacgggctg
aaggcgcagatggccgccgcccgcaccacccgcgacatgggtctggtcgaggtggcgctg
agccgcgaattcgcccggttcgcccgcgacttgcaaaccgggctgctgaccccctcgcag
atcgacgacggtatggtccgggttgtcgagcgccgcggcgccgaggcctatctgagcgag
ttgcaggctgccgagcccggccgctatatgcgcatgctggccccgaatacgagccagtac
cgtgccctgctgaagctgaaactggacctggaacaggcgctggccaccggtggctggggc
ccgaccgttgctggcggcaagctggcgccgggtgacggcggtcctcgggtcgtggccctg
cgcaaccggctgatcgccatgggattcatggatcgcagcgcggtggccagttatgacgga
acgctgcaaaaggccgtgcaggcgtttcagctggcgcatgggctcgaagccgatggggtg
gcaggcgacggaacgctcgacgagatcaacaaatcggtcgccgaccggctgaaatcggtg
atcgtggcgctggagcgcgagcgctggctgccgcgcgatcgtggcgagcgccatatcctg
gtcaaccagaccgatttcaccgccaagatcgtcgatcatggccgcgtcacctttgaaacc
cgctcggtcatcggcaagaatgtgagcgatcggcgcagccctgaattctcggatgagatg
gagcatatggtgatcaacccgagctggtatgtgccgcgctcgatcatcaccaaggaatat
ctgccgaagctgcgggcaaacccgaatgcggtgcggcatcttgaaatcacggacagccgt
ggccgtcaggtcaatcgcggagctgtggatttcagccagttttccagccgcagctttccc
tttgccatgcgccagccgccgggcaagagcaacgcgctggggctggtgaagttcatgttc
cccaacaaatacaacatttacctgcatgacacgccgcaaaaggatctgttcgcgcgcgag
gtgcgggcctattcgcatggctgtattcgcctggcgcaaccctttgaatttgcctatgcg
ctgctggcactgcaagaggccgatccgaaatccttctttcataacgtgctgaacaccggt
cgcgagaccaaggtcgatctggaacgccatgttccggtgcacatcatctatcgcacggcg
gtggtcgatgaccgggggcaggcgggctatcgccgtgacgtttacgggcgtgacgcaaag
atttgggaggcgctcagccgggcaggggtggttctgaccgcggttcagggttaa
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