KEGG   Ruegeria pomeroyi: SPO1934
Entry
SPO1934           CDS       T00215                                 
Name
(GenBank) hypothetical protein
  KO
K06915  DNA double-strand break repair helicase HerA and related ATPase
Organism
sil  Ruegeria pomeroyi
Brite
KEGG Orthology (KO) [BR:sil00001]
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03400 DNA repair and recombination proteins [BR:sil03400]
    SPO1934
DNA repair and recombination proteins [BR:sil03400]
 Prokaryotic type
  DSBR (double strand breaks repair)
   HR (homologous recombination)
    Archaeal homologous recombinant proteins
     SPO1934
SSDB
Motif
Pfam: HerA_C DUF87 FtsK_SpoIIIE ResIII AAA_10 AAA_22 SLFN-g3_helicase AAA_30 TrwB_AAD_bind CbiA nSTAND3 AAA_16 T2SSE LRRFIP Hydrolase AAA_7 AAA_19
Other DBs
NCBI-ProteinID: AAV95210
UniProt: Q5LS36
LinkDB
Position
2061707..2063260
AA seq 517 aa
MDGKIFLGGGGPDYGVAQGLDLKYANRHGLIAGATGTGKTVTLQILAQGFAEAGVPVFLA
DVKGDLSGMAKPGSPDHKLHAAFTSRAEKIGLSDYAYRACPVTFWDLFGEQGHPVRTTVA
EMGPLLLSQLLELTEAQEGILNIAFRLSDEEGLPLLDLKDLQALLVWIGENGKSLSLRYG
NISTASVGAIQRRLLVIENQGGARLFGEPALDLADMMRVDDQGRGMVNILAADTLMASPR
LYSTFLLWLLSELFEELPEVGDPEKPKLVFFFDEAHLLFDDAPKALVDKVEQVARLIRSK
GVGVYFITQNPADVPEDVLGQLGNRIQHALRAFTARDRKNLRLAAETYRENPAFDTEEAI
REVGVGEAVTSMLMKKGVPGVVERTLIRPPSSQLGPITPAERKAILNTSDMAGKYDTPLD
RKSAFEILAKRAEEAAKEAEQAEERAEEASPWEREYNSARRYSGSRVGRSSARQTSSRRR
SEDTLTSAMGEAVIKELKGTTGRRIVRGILGSLFKGR
NT seq 1554 nt   +upstreamnt  +downstreamnt
atggatggaaagattttcctgggcggcggcggcccggattacggcgtggcgcaggggctg
gacctgaaatatgccaaccgacacgggctgattgcgggcgccaccggtaccggcaagacg
gtgacgctgcaaatcctcgcccagggctttgccgaggccggggtgccggtgtttctggcc
gatgtcaaaggcgacctgtcgggcatggccaagcccggttcgcccgatcacaagctgcac
gcggcctttacctcgcgcgcggaaaagatcggcctgagcgattacgcctatcgcgcctgt
ccggtgaccttctgggatctgtttggcgaacagggccatccggtgcgcaccaccgtggcc
gagatggggccgttgttgctgtcgcagttgctggagctgacagaggcgcaggagggtatc
ctgaacatcgccttccgcctttcggacgaagaggggctgccgctgctcgatctcaaggat
cttcaggcattgctggtctggatcggcgagaatggtaaatcgctgtcgctgcgctatggc
aatatctcgaccgcctcggtgggcgcgattcagcgccggctgctggtgatcgagaaccag
ggcggcgcgcgcctgttcggcgaaccggcgctggatctggccgacatgatgcgggtcgat
gaccaggggcgcggcatggtcaacatcctggccgccgatacgctgatggcctcgccgcgg
ctctactcgaccttcctgctctggctgctcagcgagctgttcgaggaactgcccgaggtg
ggcgaccccgaaaagccgaaactggtgttcttctttgacgaggcgcatctgctgtttgat
gacgcgcccaaggcgctggtggacaaggtcgaacaggtggcccgcctgatccggtccaag
ggggtgggggtctatttcatcacccagaacccggcggatgtgcccgaggatgtgctgggt
cagctgggcaaccgcatccagcacgcgctgcgcgcctttaccgcacgcgaccgcaagaac
ctgcggctggccgccgagacctatcgcgagaaccccgcgttcgacaccgaagaggcgatc
cgcgaggtgggcgtgggcgaggcggtgacttcgatgctgatgaaaaagggcgtgccgggg
gtggtggaacgcaccctgatccgcccgccctcgtcgcaactgggtccgatcactccggcc
gagcgcaaggcgatcctgaacacctcggacatggcggggaaatacgacacgccgctggac
cgcaaatcggccttcgagattctggcgaaacgggccgaggaggccgcgaaagaggccgaa
caggccgaggagcgcgccgaggaggccagcccctgggagcgcgagtacaactcggcgcgg
cgctattccggcagccgggtgggccggtcgagcgcgcgtcagaccagcagccggcgccgc
agcgaggacacgctgaccagcgccatgggcgaggcggtgatcaaggagctgaaaggcact
accggccggcgcatcgtgcgcggcattctgggcagcctgttcaaggggcgctga

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