Ruegeria pomeroyi: SPO1934
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Entry
SPO1934 CDS
T00215
Name
(GenBank) hypothetical protein
KO
K06915
DNA double-strand break repair helicase HerA and related ATPase
Organism
sil
Ruegeria pomeroyi
Brite
KEGG Orthology (KO) [BR:
sil00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
sil03400
]
SPO1934
DNA repair and recombination proteins [BR:
sil03400
]
Prokaryotic type
DSBR (double strand breaks repair)
HR (homologous recombination)
Archaeal homologous recombinant proteins
SPO1934
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
HerA_C
DUF87
FtsK_SpoIIIE
ResIII
AAA_10
AAA_22
AAA_30
TrwB_AAD_bind
CbiA
nSTAND3
T2SSE
Hydrolase
AAA_7
AAA_19
LRRFIP
Motif
Other DBs
NCBI-ProteinID:
AAV95210
UniProt:
Q5LS36
LinkDB
All DBs
Position
2061707..2063260
Genome browser
AA seq
517 aa
AA seq
DB search
MDGKIFLGGGGPDYGVAQGLDLKYANRHGLIAGATGTGKTVTLQILAQGFAEAGVPVFLA
DVKGDLSGMAKPGSPDHKLHAAFTSRAEKIGLSDYAYRACPVTFWDLFGEQGHPVRTTVA
EMGPLLLSQLLELTEAQEGILNIAFRLSDEEGLPLLDLKDLQALLVWIGENGKSLSLRYG
NISTASVGAIQRRLLVIENQGGARLFGEPALDLADMMRVDDQGRGMVNILAADTLMASPR
LYSTFLLWLLSELFEELPEVGDPEKPKLVFFFDEAHLLFDDAPKALVDKVEQVARLIRSK
GVGVYFITQNPADVPEDVLGQLGNRIQHALRAFTARDRKNLRLAAETYRENPAFDTEEAI
REVGVGEAVTSMLMKKGVPGVVERTLIRPPSSQLGPITPAERKAILNTSDMAGKYDTPLD
RKSAFEILAKRAEEAAKEAEQAEERAEEASPWEREYNSARRYSGSRVGRSSARQTSSRRR
SEDTLTSAMGEAVIKELKGTTGRRIVRGILGSLFKGR
NT seq
1554 nt
NT seq
+upstream
nt +downstream
nt
atggatggaaagattttcctgggcggcggcggcccggattacggcgtggcgcaggggctg
gacctgaaatatgccaaccgacacgggctgattgcgggcgccaccggtaccggcaagacg
gtgacgctgcaaatcctcgcccagggctttgccgaggccggggtgccggtgtttctggcc
gatgtcaaaggcgacctgtcgggcatggccaagcccggttcgcccgatcacaagctgcac
gcggcctttacctcgcgcgcggaaaagatcggcctgagcgattacgcctatcgcgcctgt
ccggtgaccttctgggatctgtttggcgaacagggccatccggtgcgcaccaccgtggcc
gagatggggccgttgttgctgtcgcagttgctggagctgacagaggcgcaggagggtatc
ctgaacatcgccttccgcctttcggacgaagaggggctgccgctgctcgatctcaaggat
cttcaggcattgctggtctggatcggcgagaatggtaaatcgctgtcgctgcgctatggc
aatatctcgaccgcctcggtgggcgcgattcagcgccggctgctggtgatcgagaaccag
ggcggcgcgcgcctgttcggcgaaccggcgctggatctggccgacatgatgcgggtcgat
gaccaggggcgcggcatggtcaacatcctggccgccgatacgctgatggcctcgccgcgg
ctctactcgaccttcctgctctggctgctcagcgagctgttcgaggaactgcccgaggtg
ggcgaccccgaaaagccgaaactggtgttcttctttgacgaggcgcatctgctgtttgat
gacgcgcccaaggcgctggtggacaaggtcgaacaggtggcccgcctgatccggtccaag
ggggtgggggtctatttcatcacccagaacccggcggatgtgcccgaggatgtgctgggt
cagctgggcaaccgcatccagcacgcgctgcgcgcctttaccgcacgcgaccgcaagaac
ctgcggctggccgccgagacctatcgcgagaaccccgcgttcgacaccgaagaggcgatc
cgcgaggtgggcgtgggcgaggcggtgacttcgatgctgatgaaaaagggcgtgccgggg
gtggtggaacgcaccctgatccgcccgccctcgtcgcaactgggtccgatcactccggcc
gagcgcaaggcgatcctgaacacctcggacatggcggggaaatacgacacgccgctggac
cgcaaatcggccttcgagattctggcgaaacgggccgaggaggccgcgaaagaggccgaa
caggccgaggagcgcgccgaggaggccagcccctgggagcgcgagtacaactcggcgcgg
cgctattccggcagccgggtgggccggtcgagcgcgcgtcagaccagcagccggcgccgc
agcgaggacacgctgaccagcgccatgggcgaggcggtgatcaaggagctgaaaggcact
accggccggcgcatcgtgcgcggcattctgggcagcctgttcaaggggcgctga
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