Ruegeria pomeroyi: SPO2478
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Entry
SPO2478 CDS
T00215
Name
(GenBank) RNA helicase
KO
K11927
ATP-dependent RNA helicase RhlE [EC:
5.6.2.7
]
Organism
sil
Ruegeria pomeroyi
Pathway
sil03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
sil00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
SPO2478
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
sil03019
]
SPO2478
Enzymes [BR:
sil01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
SPO2478
Messenger RNA biogenesis [BR:
sil03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
SPO2478
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
AAA_19
ERCC3_RAD25_C
AAA_22
Helicase_RecD
DUF6036
Motif
Other DBs
NCBI-ProteinID:
AHB86026
UniProt:
V5UYF4
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All DBs
Position
2628406..2629668
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AA seq
420 aa
AA seq
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MSDFDMMGLDDALVSRLTAMGITEPTPIQARAIPEALNGHDVMGLAQTGTGKTAAFGVPL
ITLLSRVGRKPARGTVRGLVLAPTRELAQQIAETLKALTEDTPLKVAIVVGGVSINPQIK
RLERGIDILVATPGRLMDLMERRAVDLGSCSFLVLDEADQMLDLGFIHSLRKIAAVLPKE
RQTMLFSATMPKLMNEIAQSYLNSPRRIEVSPPGKAADKVTQVVHFIAKAAKTDLLIELL
DSHRDERAIVFGRTKWGCEKLAKTLEKAGFATAAVHGNKSQGQRDRAIAAFKSADVRVLV
ATDVAARGLDIPDVKHVYNYELPNVPDAYVHRIGRTARAGKDGAAVAFCAPDEMEELAAI
QKVMKSAIPIASGRPWQPIEDPAKPAARKGPGGAAGKPGGGGARRNRRGGRGRSTARKAA
NT seq
1263 nt
NT seq
+upstream
nt +downstream
nt
gtgagcgattttgacatgatggggctcgatgacgccctggtgagccggctgaccgccatg
ggcatcaccgaaccgaccccgattcaggcccgtgccatccccgaggcgctgaacggccat
gacgtgatgggcctggcccagaccggcaccggcaagaccgccgcctttggcgtgccgctg
atcaccctgctcagccgggtgggccgcaaaccggcgcgcggcaccgtgcgcggactggtg
ctggcccctacccgcgaactggcgcaacagatcgccgaaacgctgaaggcgctgaccgag
gataccccgctcaaggtggcgatcgtggtgggcggcgtgtccatcaacccgcagatcaag
cggctggaacgcggcatcgacatcctcgtcgccaccccgggccgcctgatggacctgatg
gaacgccgcgccgtcgatctgggcagctgttccttcctggtgctggacgaggccgaccag
atgctcgacctcggcttcatccactcgctgcgcaagatcgcggcggtgctgccgaaagag
cgccagaccatgctgttctcggccaccatgcccaagctgatgaacgagatcgcccagagc
tatctcaacagcccgcgccggatcgaggtctcgcccccgggcaaggccgccgacaaggtc
acgcaagtggtgcatttcatcgccaaggcggccaagaccgatctgctgatcgagcttctg
gacagccaccgcgacgagcgcgccatcgtgttcgggcgcaccaaatggggctgcgagaag
ctggccaagacgctggaaaaggccggttttgccactgccgccgtgcatggcaacaaaagc
cagggccagcgcgaccgcgccatcgccgccttcaaatcggccgatgtacgggtgctggtg
gccaccgatgtggccgcgcgcgggctcgacatccccgacgtgaaacatgtctacaactac
gaattgcccaatgtgcccgatgcctatgtgcaccggatcggccgcaccgcgcgggcgggc
aaggacggcgccgcggtggccttctgcgcccctgacgagatggaggaattggccgccatc
cagaaggtgatgaagagcgcgatcccgatcgcctcggggcgtccctggcagccgatcgaa
gatccggccaaaccggcggcccgcaagggccccggcggcgctgccggcaagcccggcggc
ggcggagcccgccgcaaccggcgcggcggccgtggccgcagcaccgcgcgcaaggcagcc
tga
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