Ruegeria pomeroyi: SPO2920
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Entry
SPO2920 CDS
T00215
Symbol
fabJ-1
Name
(GenBank) fatty oxidation complex, alpha subunit
KO
K01782
3-hydroxyacyl-CoA dehydrogenase / enoyl-CoA hydratase / 3-hydroxybutyryl-CoA epimerase [EC:
1.1.1.35
4.2.1.17
5.1.2.3
]
Organism
sil
Ruegeria pomeroyi
Pathway
sil00071
Fatty acid degradation
sil00280
Valine, leucine and isoleucine degradation
sil00310
Lysine degradation
sil00362
Benzoate degradation
sil00380
Tryptophan metabolism
sil00410
beta-Alanine metabolism
sil00640
Propanoate metabolism
sil00650
Butanoate metabolism
sil00907
Pinene, camphor and geraniol degradation
sil00930
Caprolactam degradation
sil01100
Metabolic pathways
sil01110
Biosynthesis of secondary metabolites
sil01120
Microbial metabolism in diverse environments
sil01200
Carbon metabolism
sil01212
Fatty acid metabolism
Module
sil_M00087
beta-Oxidation
Brite
KEGG Orthology (KO) [BR:
sil00001
]
09100 Metabolism
09101 Carbohydrate metabolism
00640 Propanoate metabolism
SPO2920 (fabJ-1)
00650 Butanoate metabolism
SPO2920 (fabJ-1)
09103 Lipid metabolism
00071 Fatty acid degradation
SPO2920 (fabJ-1)
09105 Amino acid metabolism
00280 Valine, leucine and isoleucine degradation
SPO2920 (fabJ-1)
00310 Lysine degradation
SPO2920 (fabJ-1)
00380 Tryptophan metabolism
SPO2920 (fabJ-1)
09106 Metabolism of other amino acids
00410 beta-Alanine metabolism
SPO2920 (fabJ-1)
09109 Metabolism of terpenoids and polyketides
00907 Pinene, camphor and geraniol degradation
SPO2920 (fabJ-1)
09111 Xenobiotics biodegradation and metabolism
00362 Benzoate degradation
SPO2920 (fabJ-1)
00930 Caprolactam degradation
SPO2920 (fabJ-1)
Enzymes [BR:
sil01000
]
1. Oxidoreductases
1.1 Acting on the CH-OH group of donors
1.1.1 With NAD+ or NADP+ as acceptor
1.1.1.35 3-hydroxyacyl-CoA dehydrogenase
SPO2920 (fabJ-1)
4. Lyases
4.2 Carbon-oxygen lyases
4.2.1 Hydro-lyases
4.2.1.17 enoyl-CoA hydratase
SPO2920 (fabJ-1)
5. Isomerases
5.1 Racemases and epimerases
5.1.2 Acting on hydroxy acids and derivatives
5.1.2.3 3-hydroxybutyryl-CoA epimerase
SPO2920 (fabJ-1)
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
3HCDH_N
3HCDH
ECH_1
ECH_2
NAD_binding_2
DAO
2-Hacid_dh_C
F420_oxidored
UDPG_MGDP_dh_N
Pyr_redox_2
NAD_Gly3P_dh_N
Sacchrp_dh_NADP
ApbA
NAD_binding_8
FAD_binding_3
Motif
Other DBs
NCBI-ProteinID:
AAV96161
UniProt:
Q5LPC8
LinkDB
All DBs
Position
3117718..3119919
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AA seq
733 aa
AA seq
DB search
MSDFTLTKDADGVAFITWDAQGKSMNVMTREAFELVDSLVDQALADDEVKGIVITSGKSD
FAGGMDLNTLAVIREEAGENPAQGLFDFVMGGHRIMRKLELAGMDPKTKKGGKPVACAIN
GTCAGIGTEIALACHHRVMTTNPKAKIGLPEILLGIFPGGGGTIRYSRMVGAMAAAPVLL
EGKMMDPAKAKGAQMVDALADDPVAAAKEWVLNAKDADLVKPWDAKGYKMPGGAPYHPAG
FMTFVGASAMVNGKTQGAFPAPKALLSAIYEGALVDFDTALRIEARWFTHVLMNPSSSAM
IRSLFINKQALEKGAVRPKDIPDQRVKKLGVLGAGMMGAGIALVSAQAGMEVVLIDRDQA
AADKGKAYTEAYLDKGMKRGKVTAEKKEAMLGLITATPDLDALKGCDLIIEAVFEDPGVK
AEMTKKVEAIIPEDCIFASNTSTLPITGLAKASVRPEQFIGIHFFSPVEKMLLVEIIKGK
ETGPRAVAKALDYVRQIRKTPIVVNDARFFYCNRCIIPYVNEGARMITEGVSPVLIDNAA
RQLGFPVGPIQLTDETSIDLGAKIARATKAAMGNAYPESPADDLIFWMEELGRMGRKANA
GFFDYDDKGKRTGYWQGLQDKYPLAEEQPDLIEVQERLMFAQVLEAVRALEEGVLEDIRE
GDVGAILAWGFAPWSGGPLSWIDIIGTPYAADRCDQLAAKYGERFACPPLLREMADKGQS
FYGRFDPEAKSAA
NT seq
2202 nt
NT seq
+upstream
nt +downstream
nt
atgagtgattttacgctgaccaaggacgccgacggcgtcgccttcatcacctgggatgct
cagggcaagtcgatgaacgtgatgacccgcgaggcctttgaactggttgacagcctggtc
gatcaggcgctggccgatgacgaggtcaagggcatcgtcatcaccagcggcaagagcgat
ttcgccggcggcatggacctgaacacgctggccgtgatccgcgaggaagcgggcgaaaac
ccggcccagggcctgttcgacttcgtcatgggcggccaccgcatcatgcgcaagctggaa
ctggcgggcatggaccccaagaccaagaagggcggcaagccggtggcctgcgccatcaac
ggcacctgcgccgggatcggcaccgagatcgcgctggcctgtcatcaccgggtgatgacc
accaaccccaaggccaagatcggcctgcccgagatcctgctgggcatcttccccggcggc
ggcggcaccatccgctattcccgcatggtgggcgccatggccgcggccccggtgctgctg
gaaggcaagatgatggacccggccaaggccaagggtgcgcagatggtcgacgcattggcg
gatgacccggttgccgccgccaaggaatgggtgctgaacgccaaggatgccgatctggtc
aaaccctgggacgccaagggctacaagatgcccggcggcgccccctatcatccggcgggt
ttcatgacctttgtcggcgcctcggccatggtcaacggcaagacccaaggcgccttcccc
gcgcccaaggcactgctgagcgccatctacgagggcgcgctggtcgatttcgacaccgcg
ctgcgcattgaggcacgctggttcacccatgtgctgatgaacccctcctcctcggccatg
atccgcagcctcttcatcaacaagcaggcgctggagaaaggcgcggtgcggcccaaggac
atccccgaccagcgggtcaagaaactcggcgtgctgggcgcgggcatgatgggcgcgggc
atcgcgctggtcagcgcgcaggcaggtatggaggtcgtgctgatcgaccgtgaccaggcc
gccgccgacaagggcaaggcctataccgaagcttacctcgacaaggggatgaagcgcggc
aaggtcaccgccgagaagaaagaggcgatgctgggcctgatcaccgccaccccggatctg
gacgcgctgaaaggctgtgacctgatcatcgaggcggtgttcgaggatccgggcgtgaag
gccgagatgaccaagaaggtcgaggcgatcatccccgaggactgcatctttgcctccaac
acctcgaccctgccgatcaccggtttggccaaggcaagcgtgcggcccgaacagttcatc
ggcatccacttcttctcgccggtcgagaagatgctgctggtcgagatcatcaagggcaag
gaaaccggcccgcgggcggtggccaaggcgctggattacgtgcgccagatccgcaagacc
ccgatcgtggtcaatgatgcgcgtttcttctactgcaaccgctgcatcattccgtatgtc
aacgaaggcgcgcggatgatcaccgagggcgtgtcgccggtgctgatcgacaatgcggcg
cggcagctgggtttcccggtgggtccgatccagctgaccgacgaaacctcgattgatctc
ggcgccaagatcgcgcgggcgaccaaggcggcgatgggcaatgcttatcccgaaagcccg
gctgacgacctgatcttctggatggaagagctgggccggatgggccgcaaggccaacgcg
ggcttcttcgattatgacgacaagggcaagcgcaccggctattggcagggcctgcaggac
aagtacccgctggccgaagagcagcccgacctgatcgaggtgcaggaacgcctgatgttc
gcgcaggtgctggaagcggtgcgtgcgctggaagaaggcgtgctggaagacatccgcgaa
ggcgacgtgggcgccatcctggcctggggctttgccccttggtcgggcggcccgctcagc
tggatcgacatcatcggcacgccctacgcggcggatcgctgtgaccagttggcggcgaaa
tacggcgagcgcttcgcctgcccgccgctgctgcgcgaaatggccgacaaggggcagagc
ttctacgggcgttttgaccccgaggcgaaatcggcggcctga
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