Ruegeria pomeroyi: SPO3330
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Entry
SPO3330 CDS
T00215
Symbol
rnr
Name
(GenBank) ribonuclease R
KO
K12573
ribonuclease R [EC:
3.1.13.1
]
Organism
sil
Ruegeria pomeroyi
Pathway
sil03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
sil00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
SPO3330 (rnr)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
sil03019
]
SPO3330 (rnr)
03016 Transfer RNA biogenesis [BR:
sil03016
]
SPO3330 (rnr)
Enzymes [BR:
sil01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.13 Exoribonucleases producing 5'-phosphomonoesters
3.1.13.1 exoribonuclease II
SPO3330 (rnr)
Messenger RNA biogenesis [BR:
sil03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
SPO3330 (rnr)
Transfer RNA biogenesis [BR:
sil03016
]
Prokaryotic type
tRNA degradation factors
SPO3330 (rnr)
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNB
CSD2
S1
RNase_II_C_S1
MarR_2
Motif
Other DBs
NCBI-ProteinID:
AAV96557
UniProt:
Q5LN82
LinkDB
All DBs
Position
complement(3530656..3532914)
Genome browser
AA seq
752 aa
AA seq
DB search
MTRIPTKQEILDWISAHPTLTSKRDIAKAFGIKGSDRIDLKRILKELEAEGHLEKRKRSY
ADPDRLPPVSVLQVKEPDENGDLFARPLEWHGEGVEPIVLVLPRASDPALGAGDRILARL
TVVHEEDHNYEARLIRRIGTNPHKILGIFRKSAEGGRILPIDKAGQNEWLVAEGAVHGAK
DGELVEAEQAGPKGRLGLPRARIIERLGDPSAPKAVSLIAIHQHGIPDDFPDKVIEEADS
AKPQGLSGRQDLRDMALVTIDPSDARDHDDACFAHADDDPKNPGGHVIWVAIADVAAYVR
AGSALDREARKRGNSTYFPDRVVPMLPDRLSGDLCSLHEGVPRACIAVRMQIDAQGNKIG
HRFVRGMMRSVASLNYQEVQDAIDGSPNDKTGPLLDEVLTPLYAAYKALDAERDRRQPLD
LDLPERRIVLNDKGHVESVAFRDRLDAHKLIEEFMILANVAAAETLIAKRVPLLFRVHEE
PAPEKLEALRETAQASGLTLAKGQVLQTRHLNALLHQAAGTDEAELINISTLRSMAQAYY
NPENFGHFGLALKNYAHFTSPIRRYSDLIVHRGLIKAHGWGDDGLTADEIEQLDRIATHI
SDTERRSMMAERDTTDRYLAAYLSERVGNEFSGRISGIARFGAFVKLDETGADGLVPVRS
LGREFFHFDREAGTLMGSETGLLIAIGQRVTVRLAQASPVTGGLEFEMLSIEDKDMPRGG
TPSKGKRVVRRKAAKAKHKTDKLKRKMEGRRK
NT seq
2259 nt
NT seq
+upstream
nt +downstream
nt
atgactcgcatccctaccaagcaggagatcctcgactggatttccgcgcatcccacgctc
acctcgaaacgcgatatcgccaaggcctttggtatcaagggctcggaccggatcgacctg
aaacgcatcctcaaggagctggaggccgagggccatctggagaagcgcaagcgcagctat
gccgaccccgaccggctgccgccggtcagcgtgttgcaggtgaaagaacccgatgaaaac
ggtgatctcttcgcgcgtccgttggaatggcatggcgaaggggtggaacccatcgtgctg
gtgctgccgcgcgccagtgatccggcgctgggggcgggggatcgtatccttgcccgcctg
accgtggtgcatgaagaggatcacaattacgaggcgcggctgatccgccggatcggcacc
aacccgcacaagatcctcggcatctttcgcaagagcgccgaaggtggccgcattctgccc
atcgacaaggcgggccagaacgaatggctggtggccgagggcgcggtgcatggcgccaag
gacggcgagctggtcgaggccgaacaggccgggcccaagggccggctgggcctgccgcgc
gcccgcatcatcgagcggttgggtgatccatccgcgcccaaggcggtatcgctgatcgcc
atccaccagcacggcatccccgacgatttccccgacaaggtgatcgaggaggccgacagc
gccaagccgcagggcctgtcagggcgccaggatctgcgcgacatggcgctggtcaccatc
gacccctcggatgcgcgcgaccatgatgacgcctgtttcgcccatgccgatgacgacccc
aagaaccctggcggccatgtgatctgggtcgcgattgccgatgtggcggcctatgtccgt
gcgggcagcgcactggatcgcgaggcgcgcaagcgcggcaactcgacctatttccccgac
cgggtggtgccgatgctgcccgaccggctttcgggcgatctgtgctcgctgcacgaaggg
gtgccgcgcgcctgtatcgcggtgcggatgcagatcgacgcgcaaggcaacaagatcggg
caccggtttgtgcgcgggatgatgcgctcggtcgcctcgctgaactatcaggaggtgcag
gacgccatcgacggcagccccaacgacaagaccgggccgctgctggatgaggtgctgacg
ccgctttatgccgcctacaaggcgctcgatgcggaacgtgatcggcgccagccgctcgac
cttgatctgccggaacgcaggatcgtgctgaacgacaagggccatgtggaaagcgtggcc
ttccgcgaccggctggacgcgcacaagctgatcgaagagttcatgatcctcgccaacgtg
gccgccgccgagacgctgatcgccaagcgcgtgccgctgttgttccgggtccacgaggaa
cccgcccccgaaaagctggaggcgctgcgcgagacggcgcaggcctccgggttgacgctg
gccaaggggcaggtgctgcaaacccgtcacctgaacgcgctcttgcatcaggcggcaggc
acggacgaggcggaactgatcaacatctcgaccctgcggtcgatggcgcaggcctattac
aaccccgagaatttcgggcatttcggtctggcgttgaagaattacgcgcatttcacctcg
cccatccggcgctattccgacctgatcgtgcatcgcggcctgatcaaggcgcatggctgg
ggcgatgacgggctgacggcggacgagatcgagcagctggaccgcatcgccacccatatc
tcggacaccgagcgccgctcgatgatggccgagcgggacaccaccgatcgctatctggcg
gcctatctgtcggaacgggtgggcaatgaattcagcggccggatcagcggcatcgcccgg
ttcggcgcctttgtgaaactggatgagaccggcgccgacgggctggtgccggtgcgttcg
ctcgggcgcgagttctttcatttcgaccgcgaggcggggacgctgatggggtcggaaacc
gggctgctgatcgcgatcggtcagcgggtgacggtacggctggcgcaggcctcgccggtg
accggggggctggagttcgagatgctgagcatcgaggacaaggacatgccacgtggcggc
accccgtccaagggcaagcgcgttgtgcgccgtaaggcagccaaggccaagcacaagacc
gacaagctgaagcgcaagatggaaggacgccggaaatag
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