Ruegeria pomeroyi: SPO3389
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Entry
SPO3389 CDS
T00215
Symbol
pnp
Name
(GenBank) polyribonucleotide nucleotidyltransferase
KO
K00962
polyribonucleotide nucleotidyltransferase [EC:
2.7.7.8
]
Organism
sil
Ruegeria pomeroyi
Pathway
sil03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
sil00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
SPO3389 (pnp)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
sil03019
]
SPO3389 (pnp)
03016 Transfer RNA biogenesis [BR:
sil03016
]
SPO3389 (pnp)
Enzymes [BR:
sil01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.8 polyribonucleotide nucleotidyltransferase
SPO3389 (pnp)
Messenger RNA biogenesis [BR:
sil03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Other RNA degradosome components
SPO3389 (pnp)
Transfer RNA biogenesis [BR:
sil03016
]
Prokaryotic type
tRNA degradation factors
SPO3389 (pnp)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNase_PH
RNase_PH_C
S1
PNPase
KH_1
S1_RRP5
KH-I_KHDC4-BBP
S1_2
Motif
Other DBs
NCBI-ProteinID:
AAV96616
UniProt:
Q5LN23
LinkDB
All DBs
Position
complement(3591253..3593397)
Genome browser
AA seq
714 aa
AA seq
DB search
MFDVTTKSMQWGEETLTLESGKIARQADGSVVATLGETRVMANVTFAREQKPGQDFFPLT
VHYQEKYYAAGKVPGGFFKREARPTEKETLTARLIDRPIRPLFVPGFKNEVLVMCTVLSH
DLVNDPDIVAMIAASAALTISGVPFMGPIAGCRVGYVDGEYVLNPTVDDMQDLRLNPEQR
LDLVVAGTKDAVMMVESEAYELTEAEMLGAVTFAHAQIQPVVDLIVSFAEQCAKEPFDFT
PPDYSDLYAAVKAAGEEQMRAAFAITDKQERTAAVAAAREAIKAALTEEQLADGNLGSAL
KKLEAGILRGDVVKGGKRIDGRDTTTVRPIVAETGLLPRTHGSALFTRGETQGLVVTTLG
TGDDEQFIDALHGNFKSNFLLHYNFPPYSVGEVGRVGSPGRREIGHGKLAWRALQAVLPA
PTDFPYTIRVVSEITESNGSSSMASVCGGSLSMMDAGVPLKSAVAGVAMGLILEDDGSYA
VLTDILGDEDHLGDMDFKVAGTENGITSLQMDIKVAGITPEIMEKALSQAKDGRMHILAE
MNKALSGAADFSVHAPRIETMQIPTDKIREVIGSGGKVIREIVEVSGAKVDINDDGIIKI
ASPNGDSIKKAYDMIWSIVAEPEEGQVYTGKVVKIVDFGAFVNFFGKRDGLVHVSQIENR
RLNHPSDVLKEGQEVKVKLLGFDDRGKVRLSMKVVDQETGEEIVPEKKEASEAE
NT seq
2145 nt
NT seq
+upstream
nt +downstream
nt
atgtttgatgtaacgacgaaatcgatgcagtggggcgaagaaacgctgacactggaatcg
ggcaagattgcccgtcaggccgacggttcggtggtcgccaccctgggcgagacccgcgtg
atggccaacgtgacctttgcccgtgagcagaagccgggccaggacttctttcccctgacg
gttcactatcaggaaaaatactatgccgccggcaaggtgccgggcggtttcttcaagcgc
gaggcgcgcccgaccgagaaagagacgctgaccgcgcgtctgatcgaccgtccgatccgc
ccgctgttcgtgccgggcttcaagaacgaagtgctggtgatgtgcaccgtgctttcgcac
gacctcgtcaacgatcccgatatcgttgcgatgatcgccgcttcggctgcgctgaccatc
tcgggcgtgcccttcatgggcccgatcgcaggctgccgcgtcggctatgtcgatggcgaa
tatgtcctgaacccgaccgtcgacgacatgcaggacctgcgcctgaaccccgaacagcgt
ctggacctggttgttgccgggaccaaggacgccgtgatgatggtggaatccgaggcctat
gaactgaccgaggccgagatgctgggcgccgtgacctttgcgcacgcacagatccagccg
gtggtcgacctgatcgtttcctttgccgaacaatgcgccaaggaaccgttcgatttcacc
ccgccggattactccgacctctacgccgccgtcaaagccgccggtgaagagcagatgcgc
gccgcgttcgcgatcaccgacaagcaggagcgcaccgcggccgtagccgccgcgcgcgag
gccatcaaggccgcgctgaccgaggaacagctggcagacggcaacctcggctcggccctg
aagaaactcgaagccggcattctgcgcggcgacgtggtcaagggtggcaagcggatcgac
ggacgtgacaccaccaccgtgcgtccgatcgtggccgaaaccggcctgctgccgcggacc
cacgggtctgccctgttcacccggggcgagacccagggtctggtcgtgaccacgctgggc
accggcgatgacgaacagttcatcgacgcgctgcacggcaacttcaaatccaacttcctg
ctgcattacaacttccccccctattcggtgggcgaggttggccgcgtggggtcgcccggc
cgtcgcgaaatcggccatggcaaactggcctggcgcgcgcttcaggcggtgctgccggcg
ccgaccgacttcccctataccatccgcgtggtgtccgagatcaccgagtccaacggctcg
tcctcgatggcatcggtctgcggcgggtcgctgtcgatgatggatgcgggcgtgccgctg
aaatccgccgttgccggtgtggccatgggcctgatcctggaagacgacggctcttatgcg
gttctgaccgacatcctgggtgacgaagaccacctgggtgacatggacttcaaggtggcg
ggcaccgaaaacggcatcacctcgctgcagatggacatcaaggtcgcgggcatcacgccc
gagatcatggagaaagccctgtcgcaggccaaggatggccggatgcacattctggccgag
atgaacaaggcgctgtccggcgctgccgacttctcggtccacgcaccgcgcatcgagacc
atgcagatccccaccgacaagatccgcgaagtgatcggttcgggcggcaaggtgatccgc
gagatcgtcgaagtgtcgggcgccaaggtcgacatcaacgacgatggcatcatcaagatc
gcctcgcccaacggcgactcgatcaagaaggcctatgacatgatctggtccatcgtggcc
gagcccgaagagggtcaggtctataccggcaaggtcgtgaagatcgtcgatttcggcgcc
ttcgtgaacttctttggcaagcgcgacggtctggtgcatgtgtcccagatcgaaaaccgc
cgcctgaaccatccctcggacgttctgaaggaaggccaggaagtgaaggtcaagctcttg
ggctttgacgatcgcggcaaggtgcgcctgtcgatgaaggttgtcgatcaggaaaccggc
gaagagatcgttccggagaagaaagaagcctctgaggcggaataa
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