Ruegeria pomeroyi: SPO3833
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Entry
SPO3833 CDS
T00215
Name
(GenBank) ATP-dependent RNA helicase, DEAD/DEAH box family
KO
K05592
ATP-dependent RNA helicase DeaD [EC:
5.6.2.7
]
Organism
sil
Ruegeria pomeroyi
Pathway
sil03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
sil00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
SPO3833
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
sil03019
]
SPO3833
03009 Ribosome biogenesis [BR:
sil03009
]
SPO3833
Enzymes [BR:
sil01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
SPO3833
Messenger RNA biogenesis [BR:
sil03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
SPO3833
Ribosome biogenesis [BR:
sil03009
]
Prokaryotic type
rRNA helicases
SPO3833
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
DbpA
ResIII
Motif
Other DBs
NCBI-ProteinID:
AAV97047
UniProt:
Q5LLT8
LinkDB
All DBs
Position
4048625..4050673
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AA seq
682 aa
AA seq
DB search
MTSPLLDALAERGFDTLTDVQQAVTDPELASADLLVSARTGSGKTVGFGLAIAPTLLGEA
ETLGPPAAPLALIVAPTRELALQVSRELTWLFAKAGGRIATCIGGMDARTERRTLERGAH
IVVGTPGRLRDHITRGALDLADIRAVVLDEADEMLDLGFREDLEFMLGEAPEDRRTLLFS
ATVSPAIAELAKTYQRQAARISTLGGERQHSDISYQAVQVSGGDGEHAIINLLRFHDAPT
AIVFANTRAAVARLTARLANRGFAVVSLSGELSQDERSHALQAMRDGRARVCVATDVAAR
GIDLPNLDLVIHADLPTNTEGLLHRSGRTGRAGRKGISALIVPDKISKKASRLLKWAKIE
AEWTQAPTPEDILAKDEARLLADPLWTDPVEDEETRIAAGLMEQFTAQQIAVACLRLYRA
KLTAPEELNQPPARGAPSVAASFGPSRWISLSVGREQRAEPRWLLPLLCRAGNLEKSQIG
KITMQAQETHVELAEAAVQGFLDQIGPSGVVEGEITARLLDGVPEMTRGPQGKPRPRSDR
PAAKPFKPAKPRHKADRDSAAPAAEPRPFREREATPAPAKPRRAREDGADRPAKPARATL
HAGKSEKPYKPRKPASGPGVKPSSKPGGKPSDKPGGKPWAKPGAKPGVKPGGKKPGGKPT
AGASRPAAGRPGGEAPPKRKRD
NT seq
2049 nt
NT seq
+upstream
nt +downstream
nt
atgacttccccccttctcgatgccctcgccgagcgcggcttcgacacgctgaccgatgta
caacaggcggtcaccgaccccgagttggccagcgccgacctgcttgtctcggcccggacc
ggatcgggcaagaccgtgggctttggtcttgccattgctccaaccctgctgggcgaggcc
gaaacgctgggcccgcccgccgcgccactggcgctgatcgtggcccccacccgtgagctg
gccttgcaggtcagccgcgaactgacatggctgttcgccaaggcgggagggcgcatcgcc
acctgtatcggcggcatggatgcccgcaccgagcgccggacgctggagcgcggcgcccat
atcgtcgtcggcacgccggggcgcctgcgcgaccacatcacgcgcggcgcgcttgatctg
gccgatattcgcgccgtggtgctggacgaggccgacgagatgcttgacctcggctttcgc
gaggacctggagttcatgctgggcgaggcacccgaagaccgccgcaccctgctgttctcg
gcaaccgtctctccggccatcgcggaactggccaagacctatcagcgccaggccgcgcgc
atttcgaccctgggcggcgaacgccagcattccgatatctcgtatcaggcggtgcaggtt
tcgggcggtgacggcgaacacgcgatcatcaacctgctcaggttccatgatgcgcccacc
gccatcgtattcgccaatacccgcgccgccgtggcgcggctgaccgcacgtctggccaac
cgtggctttgccgtggtcagcctgtccggagagttgagccaggacgagcgcagccatgcc
ttgcaggccatgcgcgatgggcgcgcccgggtctgcgtcgccaccgatgtggccgcgcgc
ggcatcgacctgcccaatctcgacctggtgatccacgccgatctgccgaccaataccgaa
ggtctgctgcaccgttcgggccgtaccggacgcgccgggcgcaaggggatttcggcgctg
atcgtcccggacaagatctcgaaaaaagcctcgcgcctgctgaaatgggccaagatcgag
gccgaatggacccaggcgcccacgcccgaggatatcctggccaaagacgaagcgcgtctg
ctggccgatccgctctggaccgatccggtcgaggacgaggaaacccgcatcgccgccggc
ctgatggagcagttcacggcccagcagattgcggttgcctgtctgcgtctttatcgcgcc
aagctgaccgcgcccgaggaactgaaccagccgcccgcgcgcggcgccccgtctgtggcg
gcaagtttcggcccctcgcgctggatctcgctgtcggtcgggcgcgaacagcgggccgaa
ccgcgctggctgctgccgctgctgtgccgggccggcaatctggagaaaagccagatcggc
aagatcaccatgcaggcgcaggaaacccatgtggaactggccgaagcggcggttcagggg
ttcctggaccagatcggcccgtccggtgtcgtcgaaggcgagatcaccgcgcggctgctg
gatggcgtgccggaaatgacccgcggcccgcaaggcaagccccgcccgcgcagcgaccgg
ccggcggcaaagccgttcaaaccggcgaagccacgccataaggccgatcgcgacagcgca
gcgcccgcagccgaaccgcgcccgttcagagagcgcgaggccaccccggccccggcaaaa
cccagacgcgccagggaagacggcgccgacaggcccgcgaaaccggcgcgcgcaacgctg
catgccggcaaatccgagaagccgtataaaccgcgcaaaccggcctcgggccccggtgtc
aagccgagcagcaaaccgggcggcaaacccagtgacaaacccggcggcaagccctgggca
aagcctggcgccaaacccggcgtgaaaccgggcggcaagaaaccgggtgggaaaccgaca
gctggcgcgtcgcgccccgcagcggggcgcccgggcggtgaagctccgccaaagcgcaag
cgggactga
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