KEGG   Ruegeria pomeroyi: SPO3889
Entry
SPO3889           CDS       T00215                                 
Symbol
dnaQ
Name
(GenBank) DNA polymerase III, epsilon subunit
  KO
K02342  DNA polymerase III subunit epsilon [EC:2.7.7.7]
Organism
sil  Ruegeria pomeroyi
Pathway
sil03030  DNA replication
sil03430  Mismatch repair
sil03440  Homologous recombination
Brite
KEGG Orthology (KO) [BR:sil00001]
 09120 Genetic Information Processing
  09124 Replication and repair
   03030 DNA replication
    SPO3889 (dnaQ)
   03430 Mismatch repair
    SPO3889 (dnaQ)
   03440 Homologous recombination
    SPO3889 (dnaQ)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03032 DNA replication proteins [BR:sil03032]
    SPO3889 (dnaQ)
   03400 DNA repair and recombination proteins [BR:sil03400]
    SPO3889 (dnaQ)
Enzymes [BR:sil01000]
 2. Transferases
  2.7  Transferring phosphorus-containing groups
   2.7.7  Nucleotidyltransferases
    2.7.7.7  DNA-directed DNA polymerase
     SPO3889 (dnaQ)
DNA replication proteins [BR:sil03032]
 Prokaryotic type
  DNA Replication Elongation Factors
   Elongation factors (bacterial)
    DNA polymerase III holoenzyme
     SPO3889 (dnaQ)
DNA repair and recombination proteins [BR:sil03400]
 Prokaryotic type
  SSBR (single strand breaks repair)
   MMR (mismatch excision repair)
    DNA polymerase III holoenzyme
     SPO3889 (dnaQ)
SSDB
Motif
Pfam: RNase_T RNase_H_2 DNA_pol_A_exo1
Other DBs
NCBI-ProteinID: AAV97103
UniProt: Q5LLN3
LinkDB
Position
complement(4103111..4103836)
AA seq 241 aa
MREIVLDTETTGFDPETGDRIVEIGAVELWNHIATGNTYHQYINPERMMPAEAFGVHGIG
PDILEPPQQPEPGQVTLRDKPVFAKVGQAFRDFVADSHLVIHNASFDMKFLNAELRWMGL
PEIPFDRAIDTLGMARRKFPGSPATLDALCRRFGIDNSNRVLHGALLDAEILAEVYLELI
GGKQPDFGLSTVTTGDGPGQETAWRAMPRPTPLPARITEAERTAHAEFVEKLGENAVWKR
A
NT seq 726 nt   +upstreamnt  +downstreamnt
atgcgtgaaatcgtactcgacactgaaaccaccggattcgaccctgaaaccggcgaccgc
attgtcgagattggcgcggtcgagttgtggaaccacatcgccaccggcaacacctatcac
cagtatatcaatcccgaacggatgatgcccgccgaggcttttggcgtgcatggcatcggc
cccgatatcctggagccgccgcaacagccggaaccgggccaggtgaccctgcgcgacaag
ccggtctttgccaaagtcggacaggcgtttcgcgatttcgtcgccgattcccatttggtc
atccacaacgcgtccttcgacatgaagttcctgaatgccgaactgcgctggatgggcctg
cccgagattccgttcgatcgggccatcgacacgctgggcatggcccggcgcaaatttccg
ggctcgcccgccacgctggatgcgctgtgccggcggtttggcatcgacaactcgaaccgg
gtgctgcacggggccttgctggatgccgagatcctggccgaggtctatctggaactgatc
ggtggcaagcagcccgatttcggcctgtcgacggtgacaacgggcgatggccccggacag
gaaaccgcctggcgggcgatgccacggccaaccccccttcccgcaaggatcaccgaggca
gagcgcacggcgcatgccgagtttgtcgagaaactgggggaaaacgcggtgtggaaacgc
gcctga

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