Ruegeria pomeroyi: SPO3895
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Entry
SPO3895 CDS
T00215
Symbol
trmE
Name
(GenBank) tRNA modification GTPase TrmE
KO
K03650
tRNA modification GTPase [EC:3.6.-.-]
Organism
sil
Ruegeria pomeroyi
Brite
KEGG Orthology (KO) [BR:
sil00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03016 Transfer RNA biogenesis [BR:
sil03016
]
SPO3895 (trmE)
Transfer RNA biogenesis [BR:
sil03016
]
Eukaryotic type
tRNA modification factors
Other tRNA modification factors
SPO3895 (trmE)
Prokaryotic type
Methyltransferases
SPO3895 (trmE)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
MnmE_helical
TrmE_N
MMR_HSR1
Dynamin_N
FeoB_N
ABC_tran
AAA_28
HflX_C
MeaB
RsgA_GTPase
DUF6898
AAA_29
DO-GTPase2
Spore_III_AA
Arf
Motif
Other DBs
NCBI-ProteinID:
AAV97109
UniProt:
Q5LLM7
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All DBs
Position
4108139..4109425
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AA seq
428 aa
AA seq
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MDTIFALATAQGKAGVAVIRLSGPRAYHTACLLAGPDLPSRGLSVRQLKDSQGARLDDGV
VLTFAAPASFTGEDVAEFQIHGSLATTEAVLRCLGDLDGLRLAEPGEFTRRALENGKMSL
PQVEGLADLIDAETEAQRKQAQAVLNGALGQLAEGWRAKLIRAAALLEAVIDFADEEVPT
DVSPEVRALLAEVRADLEHEIAGVRIAERIRTGFEVAIIGPPNAGKSTLLNMLAGREAAL
TSEVAGTTRDVIEVRMDLGGLPVTLLDTAGLRETGDLVEGMGIALARRRADQADLRVFLT
EDVDAMGVELQPDDLHVLPKADQRPDTANAISGVTGQGVDQLVQRISDVLKTRSSSAGIA
TRERHRVAMKTALDALDRTGTVLESGPDLYDIAAEELRTAIRALESLVGRIGVETLLDEI
FASFCLGK
NT seq
1287 nt
NT seq
+upstream
nt +downstream
nt
atggacacgatttttgccttggccacggcacagggcaaggcgggtgttgcagtcatccgc
ctgtcgggtccgcgcgcctatcacaccgcctgcctgctggcggggcccgacctgccgtcg
cggggcctgtcggtccggcagctgaaggattcgcagggcgcccgcctggatgatggtgtg
gtgctgacctttgccgcacctgccagctttaccggcgaggacgtcgccgaattccagata
catggcagcctggccaccaccgaagcggtgctgcggtgtcttggcgatcttgacggattg
cgcctggcagagcccggggaattcacccggagggctttggaaaacggcaagatgtctctt
ccccaggtcgaggggttggccgacctgatagacgccgagaccgaggcgcagcgcaaacag
gcgcaggcggtgctgaatggagcattgggccagttggccgaaggctggcgtgccaaactg
attcgcgccgccgcgctgctggaagcggtgatcgactttgccgatgaagaggtcccgaca
gatgtcagccccgaggtgcgggcgctgttggccgaggtgcgcgcggatctggaacacgag
atcgccggcgtccgtatcgcggaacgtattcgaaccgggtttgaggtggcgatcatcggg
ccgccaaatgccggaaaatcgactttgttgaacatgttggcgggtcgcgaggcagcgctg
acatcggaagtcgcaggaaccacccgtgatgtgatcgaggtgcgcatggaccttggcgga
ctgccggttactctgctcgacactgctggactgcgtgaaaccggtgatctggtcgaggga
atgggcatcgccctggcccggcgtcgggcggaccaggccgatctgcgggtctttctgaca
gaggatgtcgatgccatgggcgtggaattgcagcccgacgatctgcatgttctcccaaag
gctgaccagcgcccggatacggcaaacgcgatctcgggcgtgacggggcagggggttgat
cagctggtgcagcggatctcggatgtactcaagacccggtcctccagcgccggtattgcc
acccgcgagcgtcatcgcgtggcaatgaaaaccgctttagacgccctggatcgcaccggc
actgttctggaatcgggcccggacctgtatgatatcgctgccgaagaactgcgcaccgcg
atccgtgcactggaatctctggtcggccggattggagtggaaacgctgttggacgaaatc
tttgcgtccttctgcctgggtaagtga
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