Saccharolobus islandicus M.16.27: M1627_1455
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Entry
M1627_1455 CDS
T00900
Name
(GenBank) KH type 1 domain protein
KO
K03679
exosome complex component RRP4
Organism
sim
Saccharolobus islandicus M.16.27
Pathway
sim03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
sim00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
M1627_1455
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
sim03019
]
M1627_1455
Messenger RNA biogenesis [BR:
sim03019
]
Eukaryotic type
mRNA degradation factors
3'-5' decay
Core exosome factors
M1627_1455
Prokaryotic type
Archeal mRNA degradation factors
Exosome components
Core exosome
M1627_1455
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
ECR1_N_2
S1_RRP4
KH_6
RRP40_S1
S1
KH_1
PIMT_C
Motif
Other DBs
NCBI-ProteinID:
ACP55337
UniProt:
C3N5R2
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All DBs
Position
1405662..1406405
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AA seq
247 aa
AA seq
DB search
MSQSQKIVLQPRSIVVPGELLAEGEFQIPWSPYILKVNSKYYSTVVGLFDVKDTQFEVIP
LEGSFYYPKVNDVVIGLVEDVEIYGWVVDIKSPYKAYLPASNLLGRSVNVGEDLRRYLDV
GDYVIARIENFDRSIDPVLSVKGKDLGRVNNGIVIDIMPVKVPRVIGKNKSMYETLTSKS
GCSMFVANNGRIWATCPSRFSEEILIEAIRKIENESHIKGLTDRIKQFIEEKLGERNASS
GETKTNP
NT seq
744 nt
NT seq
+upstream
nt +downstream
nt
atgagtcagtcccagaaaattgttttacaaccaagatcaatagtagtgcctggcgagtta
ttagctgaaggcgagttccagattccttggtctccttatatattaaaggttaatagtaaa
tattactctacagttgttggactttttgatgtaaaagatactcagtttgaagtgattccg
ttggaaggttcgttttactatcctaaggtcaatgatgtggtaataggtttagtggaggac
gttgaaatctatggttgggtggttgacataaaatcgccttataaggcatatttaccagcc
tcaaatcttttaggaagatccgttaatgttggagaggatttaaggaggtatttagatgta
ggtgactatgttatagctagaattgaaaattttgatagatcaatagatcccgttttatca
gttaagggcaaggatctaggtcgtgtgaataatggtatagtcattgatataatgccagtt
aaagttccgcgtgttataggtaagaataaaagtatgtatgagactttgacctcaaaaagt
ggatgcagtatgtttgttgccaataatggtagaatatgggctacttgtccttcccgcttt
tctgaagaaattttaatcgaggccattaggaagattgaaaatgagtcacatataaaagga
ttgacagatagaataaaacaattcattgaggaaaaattaggtgagagaaatgcttcaagt
ggagagaccaaaactaatccttga
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