Simplicispira suum: C6571_11630
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Entry
C6571_11630 CDS
T05361
Name
(GenBank) ribonuclease E/G
KO
K08300
ribonuclease E [EC:
3.1.26.12
]
Organism
simp
Simplicispira suum
Pathway
simp03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
simp00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
C6571_11630
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
simp03019
]
C6571_11630
03009 Ribosome biogenesis [BR:
simp03009
]
C6571_11630
Enzymes [BR:
simp01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.26 Endoribonucleases producing 5'-phosphomonoesters
3.1.26.12 ribonuclease E
C6571_11630
Messenger RNA biogenesis [BR:
simp03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
C6571_11630
Ribosome biogenesis [BR:
simp03009
]
Prokaryotic type
rRNA processing factors
C6571_11630
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNase_E_G
RNase_E_G_Thio
S1
Anti-TRAP
Motif
Other DBs
NCBI-ProteinID:
AVO41844
UniProt:
A0A2S0N112
LinkDB
All DBs
Position
complement(2516143..2519217)
Genome browser
AA seq
1024 aa
AA seq
DB search
MKRMLINATQPEERRLAIVDGQKLLDYEIEIEGREQRKGNIYKAVVTRVEPSLEACFVDY
GEDRHGFLPFKEISKQYFAPGVSPSQARINEVIKEGQELLIQVEKEERGNKGAALTTFIS
LAGRYVVLMPNNPRGGGVSRRIEGEDRAELKENMDQLEYPNGMSIIARTAGIGRSAPELQ
WDLNYLLKLWNAIDGAAQGGKGAFLIYQESSLVIRAIRDYFNNDIGDILIDTDDIYEQAQ
QFMAHVMPEHAARVKRYRDDAALFSRFQIEHQIESAYARTVQLPSGGAIVIDHTEALVSV
DVNSARAIKGGDIEETATRTNLEAADEVARQMRLRDLGGLIVIDFIDMEESKNRREVENR
LRDALRQDRARVQFGTISKFGLMEMSRQRLKPALSEGSSIPCPRCGGSGHIRDTESSALQ
ILRIIQEESMKDNTAAVHCQVPVEVASFLLNEKRTEIAKIELKQRITVLMVPSKALETPN
YKLERLKHDDPRLDHVEASYLLADQEEDPTAVTRRSQEPTNKQTPVIKGVLPDAPAPQAA
PRAEGEVRAPRGGTRPSAAATAAPVAAAPAPATPQGLRAPEPGFLSWLKNLFGMGDTPPA
AVPAPQPAPVATAPAREPRRDGRNGSGDRSRRGGGRDAPRDGNREAQGESRGEGRGRSRG
ERGNTEARAPRDGERMDGRSEGRSDGRGRGRNGRGDSDNRSSGSAMATDQTASTGADMSL
QAPEGETRSERPARSNEARRERGEGNGRRERAPRGEGRERTPRSNDATASQAPDFADTAP
IDSLPDIDLSADEGVNAAQATEPQERSERRSRDRYGRDRQRGSRQQAAPAVEGEMMSFDE
PAAAASEASDEAPRRSYFAAAAPAAEAAPAPAPVPAANLPAEPPPALTPPPAAFSEVAQT
VAAPAGERAPSPPPQAAVPVAPRPAPAPAPAPAQAASTAMPRVASYSLPVDEMQQVAASS
GLQWVGSDPSKVAAAQAAAAAEPQPLRVPRERPPVPKLDDGPLVLVETHRDLSDLKLPFD
QPRG
NT seq
3075 nt
NT seq
+upstream
nt +downstream
nt
atgaaacggatgctgatcaatgccacgcagcctgaagagcgccgcctggccatcgtcgac
ggacaaaaactcctcgactacgaaatcgagatcgaagggcgcgaacagcgcaagggcaac
atctacaaggccgtcgtcacgcgcgtcgagcccagtctggaagcctgcttcgtcgactac
ggcgaagaccgccacggcttcctgccgttcaaggaaatctccaaacagtatttcgccccc
ggtgtctcgcccagccaggcgcgcatcaacgaggtcatcaaagaaggccaggagctgctg
attcaggtcgagaaggaagagcgcggcaacaagggtgcagccctgacgaccttcatctcg
ctggccggccgctacgtggtgctgatgcccaacaacccgcgcggaggcggcgtttcgcgc
cgcatcgagggcgaggaccgtgccgagctcaaggagaacatggaccagctggaatacccc
aacggcatgtccatcatcgcccgcaccgccggcatcggccgcagcgcgcccgagctgcag
tgggacctgaactacttgctgaaactctggaacgccatcgacggcgcggcccagggcggc
aaaggcgccttcctgatttaccaagaatcgagcctggtgattcgcgccatccgcgattac
ttcaacaacgacatcggcgacatcctcatcgataccgacgacatctacgagcaggcgcag
caattcatggcgcacgtcatgcccgagcatgccgcccgcgtgaagcgctaccgcgacgac
gccgcgctgttttcccgcttccagatcgagcaccagatcgagtcggcctacgcgcgcacc
gtgcagctgccgtccggaggcgccatcgtgatcgaccacaccgaagcattggtttccgtg
gacgtgaactcggcccgcgccatcaagggcggcgacatcgaggaaactgccacccgcacc
aacctggaagccgccgacgaagtggcgcgccagatgcggctgcgcgacctgggcggcctg
atcgtcatcgacttcatcgacatggaagagtcgaagaaccgccgcgaagtcgaaaaccgc
ttgcgcgacgcgctgcgccaggaccgcgcccgcgtgcagttcggcacgatttccaagttc
ggcctgatggaaatgagccgccagcgcttaaagcctgcgctcagcgaaggctcttccatc
ccctgcccgcgctgcggcggctccggccacatccgcgacaccgagtcttcggcgctgcag
atcctgcgcatcattcaggaagaatccatgaaggacaacaccgccgccgtgcactgccag
gtgccggtggaagtggcgagtttcctgctgaacgaaaaacgcaccgaaattgccaaaatc
gagctcaagcagcgcatcaccgtgttgatggtgcccagcaaggcactggaaacgcccaac
tacaagttggagcgcctcaagcacgacgacccgcgcctggaccatgtggaagccagctac
ctgcttgccgaccaggaagaagaccccacggccgtcacccgccgctcgcaagagccgacc
aacaagcagaccccggtgatcaagggcgtgctgcccgacgctccggcaccgcaagccgca
ccccgcgctgaaggtgaagtgcgcgcaccgcgcggcggcacacggcccagcgcggctgct
accgccgcgcctgtggcagccgcccctgcgccagccaccccgcagggtttgcgcgcgccc
gaacccggcttcctgagctggctcaagaacctctttggcatgggcgatacgccgccagcg
gccgtgccagcgccgcagccggcgcctgtggcaaccgcgcctgcacgggaaccccgccgc
gacggacgcaatggcagtggcgaccgcagccgccggggcggtggccgcgacgcaccacgc
gatggcaaccgcgaagcccagggtgaaagccgtggcgagggccgcggccgctcgcgcggt
gaacgcggcaataccgaagcgcgcgcgccccgcgacggcgagcgcatggatggacgcagc
gagggccgcagcgacggacgtggacgcggccgcaacggacgcggcgacagcgacaatcgc
tctagcggctccgcaatggccaccgaccagaccgcttcaaccggcgccgacatgtccttg
caggcccccgagggcgaaacccgcagcgaacgcccggcccgcagcaacgaagcacggcgc
gagcgcggcgaaggcaacggccggcgcgagcgcgccccgcgtggcgaaggccgcgaacgc
acgccgcgcagcaacgatgccacagcatcgcaagctcctgactttgcagataccgcgccg
attgattcgttgccggacatcgatctctcggcagacgaaggcgtgaatgctgcccaggcc
acggaaccgcaggagcgcagcgagcgccgctcgcgcgaccgctacgggcgcgaccgccag
cgcggcagccgccagcaggcagccccggccgtcgaaggcgaaatgatgtccttcgacgag
cccgctgctgcggcttccgaagccagcgacgaggcgccacggcgcagctactttgccgcc
gctgcacctgccgctgaagctgctccggcaccggctcccgtgcccgcagcgaacctgcct
gcagagccgccgccggccctcacgcccccgccagctgcgttcagcgaagtcgcacagacc
gtcgcagcgcctgctggtgagcgtgcaccaagcccgccgccacaagcagccgtgcctgtc
gcgccccggccggcgccagctcccgctccggcgccagcccaagcggccagcaccgcgatg
ccacgtgtggcgtcctacagcctgccggtcgacgaaatgcagcaagtggctgccagttcg
gggctgcagtgggtcggttccgacccttccaaggtcgctgcggcccaggccgccgccgcg
gccgagccgcagcccctgcgcgtgccacgcgaacgccctccggtgcccaagctggacgat
ggcccgctggtgctggtggaaacccaccgcgacctgagtgatctgaagctccccttcgat
cagccacgcggctga
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