Simplicispira suum: C6571_13855
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Entry
C6571_13855 CDS
T05361
Name
(GenBank) RNA polymerase sigma factor RpoD
KO
K03086
RNA polymerase primary sigma factor
Organism
simp
Simplicispira suum
Pathway
simp02040
Flagellar assembly
Brite
KEGG Orthology (KO) [BR:
simp00001
]
09140 Cellular Processes
09142 Cell motility
02040 Flagellar assembly
C6571_13855
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
simp03021
]
C6571_13855
Transcription machinery [BR:
simp03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Sigma factors
C6571_13855
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Sigma70_ner
Sigma70_r1_1
Sigma70_r2
Sigma70_r3
Sigma70_r4
Sigma70_r1_2
DUF6522
Motif
Other DBs
NCBI-ProteinID:
AVO42230
UniProt:
A0A2S0N257
LinkDB
All DBs
Position
complement(2980482..2982833)
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AA seq
783 aa
AA seq
DB search
MPAQKPAKLLKSAPAAKASPAPAKKPSAKAAPKAVAAPAAKKAPSVPKTAAKTSDSEDKK
TRTKAAGPETETTETPKKRAGRPAKAAAVPKAGKAAKTPAARGKKGKADADSDDADLSDI
ESDLEGEVEETTEAATTEAPVEKVKPLRMKISKAKERALMKEFGLDETVLSEEDLAKRRS
RLKTLIKLGKTRGYLTHGEINDHLPDKLVDQETLDVVISMLNDLGVAVYEQTPDAEQLLV
TNTAQTAATEEEAEEAAEAALSTVDSEFGRTTDPVRMYMREMGTVELLTREGEIEIAKRI
EGGLMAMMEAISASPATIAEILNMGEDIREGKVVISTIVDGFSDPNEADDYVAEEDFDEF
DEEDDDDGKGGSKAMTRRLEELKSEALRRFDKMREMFEKVHKIYDREGYGTPAYIKAQNA
LSTELMTIRFTAKTIEKLCDMVRSQVDDVRKKERELRRIIVDKCGMSQEMFIKEFPANLL
NLDWVEKQAAAGKPWSTVMARNIPPVQDLQQKLADLQSRVVVPLAQLKLINRRMNEGEAS
SRDAKKEMIEANLRLVISIAKKYTNRGLQFLDLIQEGNIGLMKAVDKFEYRRGYKFSTYA
TWWIRQAITRSIADQARTIRIPVHMIETINKMNRISRQHLQEFGFEPDASVLAEKMEIPE
DKIRKIMKIAKEPISMETPIGDDDDSHLGDFIEDGANTAPLEAAMQAGLRDVVKDILDGL
TPREAKVLRMRFGIEMTSDHTLEEVGKQFDVTRERIRQIEAKALRKLKHPSRSDKLRSFI
DSL
NT seq
2352 nt
NT seq
+upstream
nt +downstream
nt
atgcctgctcaaaagcctgcgaagttgctcaagtccgctcctgccgcgaaggcatcgccc
gcacctgccaagaagccgtccgcaaaagctgcccccaaggcagtggctgcgccggctgcc
aagaaagccccttccgtgccaaagactgctgcaaagacctccgattccgaagacaaaaag
acccgcaccaaggctgctgggcctgagaccgaaacgaccgagacgcccaagaagcgcgcc
ggccgtccggcaaaagccgccgctgtgcccaaggcgggcaaagccgccaagacaccggcc
gcgcgcggcaagaagggcaaggcagacgccgatagcgacgacgccgatctctccgacatc
gaatccgacctggaaggcgaggtcgaggaaacgaccgaagcggccacgacagaggctccg
gtggagaaggtcaagccgctgcgcatgaagatcagcaaggccaaggaacgggccttgatg
aaggaattcggcctggacgagacggttttgtccgaagaggacctggccaagcggcgctcg
cgcctgaagaccctgatcaagctgggcaagacgcgcggctatctgacgcacggcgaaatc
aacgatcacctgcccgacaagctggtggaccaggaaaccctggacgtcgtgatttccatg
ctcaacgacctgggcgtggcggtctacgagcaaaccccggacgccgagcagcttctggtt
accaacaccgcccagaccgcagccaccgaggaggaagccgaagaagccgccgaagcagca
ctttccactgtggacagtgaatttggccgtaccaccgacccggtgcgcatgtacatgcgc
gaaatgggcacggtggaactgctcacgcgcgaaggcgaaatcgaaatcgccaagcgcatc
gagggtgggctgatggcgatgatggaggcgattagcgcctcgcctgcgacgattgctgaa
atcctcaacatgggcgaggacatccgcgaaggcaaggtggttatctccaccatcgtcgat
ggtttttctgacccgaacgaagccgacgactacgttgcagaagaagacttcgatgaattc
gacgaagaggacgacgacgacggcaaaggcggctctaaggcgatgacccggcgacttgaa
gagctcaagagcgaagcactgcgtcgcttcgacaagatgcgcgaaatgttcgaaaaagtg
cacaagatctatgaccgcgaaggctacggcacgccggcatatatcaaagcccaaaacgca
ctgtccacagagttgatgaccatccgcttcaccgccaagacgattgaaaagctgtgcgat
atggtgcgcagccaggtggacgacgttcgcaagaaagagcgcgaactgcgccgcatcatc
gtggacaagtgcggcatgtcgcaggagatgttcatcaaggaatttccggccaacttgctc
aacctggattgggtcgaaaaacaggctgctgccggcaagccctggagcacggtgatggcg
cgcaacatcccgccggtgcaggatttgcagcaaaagctggctgaccttcaatcgcgggtc
gtggtgccgcttgcgcagctcaagctcatcaaccgccgcatgaacgaaggcgaagccagt
tcgcgcgacgccaagaaggaaatgatcgaggccaacctgcgcctcgtcatttcgattgcc
aagaagtacaccaaccgcggcctgcagttcctcgatttgatccaggaaggcaacatcggc
ctgatgaaggcggtggacaagttcgaataccgccgcggctacaagttctcgacctacgcc
acgtggtggattcgccaggccatcacgcgatcgattgcagatcaggcgcgcaccatccgc
attccggtgcacatgatcgagaccatcaacaagatgaaccgcatctcgcgccagcacctg
caggagttcggcttcgaacccgatgcgtccgtgctggccgagaagatggagattccggaa
gacaagatccgcaagatcatgaagatcgccaaagagccgatctccatggaaacccccatc
ggcgacgacgacgacagccacctgggcgacttcattgaagacggcgccaacacggcaccg
ctcgaagcagccatgcaagccggcctgcgcgatgtggtcaaggacattctcgatggcctg
accccgcgcgaggcaaaggtgctgcgcatgcgctttggcatcgaaatgaccagcgaccac
acactggaagaagtgggcaagcagttcgacgtcacgcgcgagcgcatccgccagatcgaa
gccaaggcgctgcgcaaattgaagcaccccagccgcagcgacaagctgcgcagcttcatc
gattcgctctaa
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