Simplicispira suum: C6571_17520
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Entry
C6571_17520 CDS
T05361
Name
(GenBank) RNA helicase
KO
K11927
ATP-dependent RNA helicase RhlE [EC:
5.6.2.7
]
Organism
simp
Simplicispira suum
Pathway
simp03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
simp00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
C6571_17520
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
simp03019
]
C6571_17520
Enzymes [BR:
simp01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
C6571_17520
Messenger RNA biogenesis [BR:
simp03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
C6571_17520
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Ortholog
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Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
P-loop_SecA
HI1480
AAA_22
Utp25_C
Motif
Other DBs
NCBI-ProteinID:
AVO42854
UniProt:
A0A2S0N3W8
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All DBs
Position
3790088..3791830
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AA seq
580 aa
AA seq
DB search
MTFDDLNLAPAIMKAVREQGYEIPTPIQAQAIPAVLAGHDLLAGAQTGTGKTAAFVLPLL
DRLSREEAPKNKFGGKGLRALVLTPTRELAAQVEESVRQYGKHLDLNSTVVFGGVGMNPQ
IDRIKRGVDVLVATPGRLLDLQQQGFLDLSTVQVLILDEADRMLDMGFIHDVKKILALVP
KDKQSLLFSATFSDEIRDLAATLLKNPQSIQVTPSNTTVQRISQVIHPVGRGKKKQVLVH
IINEHNWSQVLVFTRTKFGANNVAEFLTKHGINAMALHGNKSQSARTQALAGFKSGDIRA
LVATDIAARGIDIDDLPHVVNYEIPNVPEDYVHRIGRTGRAGASGEAVSLVCMDEEGFMM
EIERFTKQTIPVKLIEGFGPDDGEKAEPIAMGRQTIWGGAGRPPSRDVMQAAAKAARGEM
MERMRAGKATGQGNRGGRAASGGGGGGGNNGGGNGGGGHRSGAGRNAPRNGPAPGGPRGA
PRSAPSAARHTDDWQPARENAHLGTQAGTSMAPPRGAGHGATGQPDPMRTSVDSMAGGRR
GGGGYRSGGGGGGGGGYGGGRSGGGGGSRSGGGGGRRGGY
NT seq
1743 nt
NT seq
+upstream
nt +downstream
nt
atgacttttgacgatctgaatctggctccggccatcatgaaagccgtgcgcgagcaaggc
tatgaaatccctacgcctatccaggcacaggccatcccggcggtactggcggggcacgat
ctgctcgctggcgcgcaaaccggcaccggcaagacggcggcttttgtgctgccgctgctg
gaccggctgtcccgcgaagaagcaccgaaaaacaagttcggtggcaagggcctgcgcgca
ctggtgctgacccccacccgcgaactcgcagcgcaagtggaagaatccgtacgccagtac
ggcaagcaccttgacctgaactccaccgtggtcttcggcggtgtcggcatgaatccgcaa
atcgaccgcatcaaacgcggcgtggatgtgctggtggccacgccaggccgcctgctggac
ctgcagcagcaaggctttctcgacctctccacggtgcaggtgctgattcttgatgaagcc
gaccgcatgctggacatgggtttcatccacgacgtcaaaaaaattctggccttggtgccc
aaggacaagcaaagcctgctgttctcggccacgttcagcgacgagatccgcgatctggcg
gccacgctgctgaaaaatccgcaaagcatccaggtgacgcccagcaacaccacggtgcag
cgcatctcgcaggtgattcacccggtgggccgcggcaagaagaaacaggtgctggtgcac
atcatcaacgagcacaactggagccaggtgctggtgttcacccgcaccaaatttggcgcc
aacaacgtcgccgagtttctcaccaagcacggcatcaacgccatggcgctgcacggcaac
aagagccagagcgcccgcacccaggccctcgccggtttcaagagcggcgacatccgcgcg
ctggtcgccaccgacatcgccgcacgcggcatcgatatcgacgatttgccgcacgtggtg
aactacgaaatccccaacgttcccgaagactacgtgcaccgcatcggccgcactggccgc
gcgggcgccagcggcgaagccgtgagcctggtctgcatggacgaggaaggtttcatgatg
gagatcgagcgcttcaccaagcaaacgattcctgtgaagctgattgaaggcttcgggccc
gacgacggcgaaaaggccgaacccattgccatgggccggcagaccatctggggcggcgct
ggccgtccacccagccgcgacgtgatgcaggccgcagccaaggccgcacgcggcgaaatg
atggaacgcatgcgcgctggcaaggcaaccggccaaggcaaccggggtggccgggccgcc
agcggtggcggtggcggtggcggcaacaatggcggtggcaatggagggggcggccaccgc
agtggcgccgggcgcaatgcgccccgcaacggtcccgcaccgggcggtccacgtggcgcg
ccccgctccgctccttcggcagcacgccacaccgacgactggcagccagcacgtgaaaat
gcacaccttggcacccaggccggcaccagcatggccccaccccgtggcgcaggccacggt
gcaacaggccagcccgaccccatgcgcaccagcgtggacagcatggccggaggccgacgc
ggtggcggtggctatcgcagcggtggcggcggtggtggtggtggcggctacggtggcgga
cgaagcggcggcggtggcggctcgcgcagcggcggcggcggtggccggcgcggcggctac
tga
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