Saccharolobus islandicus Y.N.15.51: YN1551_1606
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Entry
YN1551_1606 CDS
T00902
Name
(GenBank) protein of unknown function UPF0027
KO
K14415
tRNA-splicing ligase RtcB (3'-phosphate/5'-hydroxy nucleic acid ligase) [EC:
6.5.1.8
]
Organism
sin
Saccharolobus islandicus Y.N.15.51
Brite
KEGG Orthology (KO) [BR:
sin00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03016 Transfer RNA biogenesis [BR:
sin03016
]
YN1551_1606
Enzymes [BR:
sin01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.8 3'-phosphate/5'-hydroxy nucleic acid ligase
YN1551_1606
Transfer RNA biogenesis [BR:
sin03016
]
Eukaryotic type
tRNA spricing factors
tRNA splicing ligase complex
YN1551_1606
Prokaryotic type
tRNA splicing ligases
YN1551_1606
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RtcB
Motif
Other DBs
NCBI-ProteinID:
ACP48694
UniProt:
C3NHT4
LinkDB
All DBs
Position
1398668..1400116
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AA seq
482 aa
AA seq
DB search
MQINITRVNSYEWRIDKGTQECMKVPVTIFADDVLIEKMKQDMTLRQATNVACLPGVQES
IYVLPDGHQGYGFPIGGIAATAIDEGGVVSPGGIGYDINCGVRLLRTNLDYEDVKPKLAQ
LVEELHRNVPSGVGSEGKVKLTSQQLDQVLAEGVAWAVDKGFGWKEDMNHMEQHGSWELA
DPSKVSPIAKQRGASQLGTLGAGNHFLEIQVVDKIFDPQIAKAIGVDHEGQVMVMVHTGS
RGLGHQVASDYLQIMERAMKKYNIQLPDRELAAVPFESREGQDYFHAMASGANFAWTNRQ
LITHWIRESFGRVFGVDPEKLDLNIVYDVAHNIAKIEEYVIEGKRKKVLVHRKGATRAFP
PGSPEIPADHRNIGQIVLIPGSMGTASYVMAGIPEGRRTWFTAPHGAGRWMSREAAVRNY
PANVVVETLAEKGIVVRAATRRVVAEEAPGAYKDVDRVAKVAHEVKIAKLVMRLRPIGVT
KG
NT seq
1449 nt
NT seq
+upstream
nt +downstream
nt
atgcagattaacattactagagttaattcatatgaatggcgtatcgataaaggtacccaa
gaatgtatgaaagttcccgttaccatatttgcagatgacgttttgattgagaaaatgaaa
caagatatgacattaagacaagctactaacgtggcttgtttacctggtgttcaagaatca
atttacgttttaccagatggccatcaaggttacggttttcctataggcggcatagcagct
actgcaattgatgaaggaggagttgtaagccctggagggataggatatgatataaattgt
ggtgttagattactcagaaccaatttagattatgaagacgtaaagccaaaattggcccag
ttagttgaggagctacatagaaacgtacctagtggtgtaggaagcgagggtaaagtgaaa
cttacctctcaacaattggatcaagtattagcagaaggagtagcgtgggcagtcgataag
ggctttggatggaaagaagatatgaatcatatggaacaacatggtagttgggagttggca
gacccttcgaaagtaagtccaatagctaaacaaagaggtgcttctcaattaggaacttta
ggagctggtaatcacttcttagaaattcaagttgttgataagatatttgatcctcaaatt
gctaaagcaataggagtggatcacgaaggtcaagtaatggttatggttcatacggggtca
agaggcctaggccatcaagtagctagtgattatttgcaaattatggaaagagccatgaag
aagtataacattcaattgccagatagggaactagccgcagttccctttgagagtagagag
ggtcaagattactttcacgcaatggcatctggagctaatttcgcgtggacgaatagacaa
ttaattacccattggataagagagagctttggaagagtgttcggtgttgacccagagaaa
ttagatcttaatatagtttatgatgtagcgcataatatagccaaaattgaggagtatgta
attgagggaaaaaggaagaaagtattggtacataggaaaggtgctactagagccttccca
cctggcagtccagaaatccctgctgatcatagaaatattggtcagatcgtcttaatacca
ggtagtatgggtactgctagctacgttatggctggaataccagaaggtagaaggacatgg
tttactgcgcctcatggtgctggtaggtggatgtctagagaagctgcggtgagaaattac
cccgctaatgtagtagttgaaactttagctgaaaaaggtatagtggtaagggctgctacc
aggagggtagtagctgaagaggcacctggagcttataaagatgttgatagagtagctaaa
gtcgctcatgaagttaaaatcgctaaattggttatgcgattaagacctataggggttacc
aaaggatga
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