Sphingopyxis indica: KNJ79_03375
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Entry
KNJ79_03375 CDS
T09492
Symbol
dapF
Name
(GenBank) diaminopimelate epimerase
KO
K01778
diaminopimelate epimerase [EC:
5.1.1.7
]
Organism
sina
Sphingopyxis indica
Pathway
sina00300
Lysine biosynthesis
sina00470
D-Amino acid metabolism
sina01100
Metabolic pathways
sina01110
Biosynthesis of secondary metabolites
sina01120
Microbial metabolism in diverse environments
sina01230
Biosynthesis of amino acids
Module
sina_M00016
Lysine biosynthesis, succinyl-DAP pathway, aspartate => lysine
Brite
KEGG Orthology (KO) [BR:
sina00001
]
09100 Metabolism
09105 Amino acid metabolism
00300 Lysine biosynthesis
KNJ79_03375 (dapF)
09106 Metabolism of other amino acids
00470 D-Amino acid metabolism
KNJ79_03375 (dapF)
Enzymes [BR:
sina01000
]
5. Isomerases
5.1 Racemases and epimerases
5.1.1 Acting on amino acids and derivatives
5.1.1.7 diaminopimelate epimerase
KNJ79_03375 (dapF)
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Gene cluster
GFIT
Motif
Pfam:
DAP_epimerase
PhzC-PhzF
Motif
Other DBs
NCBI-ProteinID:
WOF45244
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Position
complement(721678..722484)
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AA seq
268 aa
AA seq
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MADRFTKMHGLGNDFVVIDAREDAVEMTAARAHAIADRRHGIGCDQLILLEPSEKADVKM
RIFNADGGEVEACGNATRCVATLIGKPAVIETLGGMLRVSPADGGAEVTLGEPAFDWEQI
PLAMPMDTRDMPVAWDELEHGAAVNVGNPHIIFFVPEADAVALTDLGPRIETDPLFPERV
NVNVASLDGPDRLQLRVWERGVGLTQACGTGACATAVAAIRAGLAKSPVTISLPGGDLVI
RWRDGEPIVMSGAATRVFEGETDWARFG
NT seq
807 nt
NT seq
+upstream
nt +downstream
nt
atggcggatcgcttcaccaagatgcatggcctcggcaacgacttcgtcgtgatcgacgcg
cgcgaggacgcggtcgagatgaccgcggcgcgcgcgcacgcgatcgccgaccggcgccat
ggcatcggctgcgaccagctgatcctgctcgaaccgtccgaaaaggccgatgtgaagatg
cgcatcttcaatgccgacggcggcgaggtcgaggcgtgcggcaatgcgacccgctgcgtc
gcgacgctgatcggcaagcccgcggtgatcgagacgctgggcgggatgctgcgcgtcagc
cccgccgacggcggcgccgaggtgaccttgggcgagcccgccttcgactgggagcagatc
ccgctcgcgatgccgatggacacgcgcgacatgcccgtcgcgtgggacgagctcgaacat
ggcgcggcggtcaatgtcggcaatccgcacatcatcttcttcgtccccgaagccgatgcg
gtggcgctgaccgacctcggaccgcggatcgagaccgatccgctgttccccgagcgcgtc
aacgtcaatgtcgcgagcctcgacggacccgaccggctgcaattgcgcgtctgggagcgc
ggcgtcggcttgacgcaggcgtgcggcaccggtgcctgcgcgaccgcggtcgccgcgatc
cgcgccgggctcgcaaaatcgccggtcaccatctcgctgcccggcggcgacctcgtcatt
cgatggcgcgacggcgagccgatcgtgatgagcggcgccgcgacgcgcgtgttcgagggt
gagaccgactgggcgcgcttcggatga
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