Sphingopyxis indica: KNJ79_03505
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Entry
KNJ79_03505 CDS
T09492
Symbol
pnp
Name
(GenBank) polyribonucleotide nucleotidyltransferase
KO
K00962
polyribonucleotide nucleotidyltransferase [EC:
2.7.7.8
]
Organism
sina
Sphingopyxis indica
Pathway
sina03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
sina00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
KNJ79_03505 (pnp)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
sina03019
]
KNJ79_03505 (pnp)
03016 Transfer RNA biogenesis [BR:
sina03016
]
KNJ79_03505 (pnp)
Enzymes [BR:
sina01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.8 polyribonucleotide nucleotidyltransferase
KNJ79_03505 (pnp)
Messenger RNA biogenesis [BR:
sina03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Other RNA degradosome components
KNJ79_03505 (pnp)
Transfer RNA biogenesis [BR:
sina03016
]
Prokaryotic type
tRNA degradation factors
KNJ79_03505 (pnp)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNase_PH
RNase_PH_C
S1
PNPase
KH_1
BioW
S1_RRP5
KH-I_KHDC4-BBP
OB_RRP5_4th
Motif
Other DBs
NCBI-ProteinID:
WOF44027
LinkDB
All DBs
Position
743779..746076
Genome browser
AA seq
765 aa
AA seq
DB search
MFDVKKVSIEWGGETLTLETGKVARQADGAVVATLGETVVLCAVTAAKSVKEGQDFFPLT
VHYQEKYSSAGRIPGGFFKRERGATEKETLVSRLIDRPIRPLFPEGFYNEINAIAQVLSY
DGHNEPDILAMVAASAALTISGVPFMGPIGAARVGYVDGEYILNPTDEQVAEGDLDLVVA
ATHDAVMMVESEANELSEEVMLGAVMFAHDACREVIKAIIGLAEQAAKDPWELAASDDNA
ALKDKLKKLIGKDIAAAYKLTDKSARSNALNEARAKAKEQFVADGLDPQAVMAGIKLVKK
LEAEIVRGAILKDGTRIDGRSTTQIRPIEAETHFLPRAHGSALFTRGETQTIATCTLGTK
EAEQMIDGLTGLRYESFMLHYNFPPYSVGEVGRFGPPGRREVGHGKLAWRALHPVLPSKE
DFPYTIRLTSDITESNGSSSMATVCGGSLSLMDAGVPIKRPVSGIAMGLILEGKDYAILS
DILGDEDHLGDMDFKVAGTSEGITTMQMDIKIAGITKEIFEAALKQAKEGRAHILGEMNK
ALGETRSELSAHAPRIETITIDKSKIRDVIGTGGKVIREIVATTGAKVDIDDEGIIKIAS
SDPAQIEAAKAWILGIVEEPEVGKIYNGKVVNLVDFGAFVNFMGGKDGLVHVSEIRNERV
EKVADVLSEGQEVKVKVLEIDPRGKVRLSMRVVDQESGEELEDTRPAREPRGDRGDRGPR
REGGDRGRGGRDRGPRRDGGDRGPRRERSDNVPEDEGHVPDFLKD
NT seq
2298 nt
NT seq
+upstream
nt +downstream
nt
atgtttgatgtgaaaaaagtatcgatcgagtggggcggtgaaacgctgaccctcgaaacg
ggcaaggttgcccgtcaggccgacggcgctgtcgtcgccaccctcggcgaaacggtcgtc
ctgtgcgccgtcaccgccgccaagtcggtgaaggaaggccaggacttcttcccgctgacc
gtccattaccaggaaaaatattcctcggccggccgcattcccggcggcttctttaagcgc
gaacgcggcgcgaccgaaaaggaaacgctcgtttcccgcctgatcgaccgtccgatccgc
ccgctgttccccgaaggtttctataacgagatcaacgccatcgctcaggtgctgagctat
gacggccacaacgagcccgacatcctcgcgatggtcgcggcgtcggccgcactcaccatc
tcgggcgtccccttcatggggccgatcggcgccgcgcgcgtcggctatgtcgatggcgaa
tatatcctcaatccgaccgacgaacaggtcgccgaaggcgacctcgacctcgtcgtcgcg
gcgacgcacgacgcggtgatgatggtcgaatccgaagccaatgagctgtcggaagaggtg
atgctgggcgcggtgatgttcgcgcacgacgcgtgccgcgaggtcatcaaggcgatcatc
ggccttgccgaacaggccgcgaaggacccgtgggaactcgccgcttcggacgacaatgcc
gcgctcaaggacaagctcaagaagctgatcggcaaggatattgccgcggcctacaagctg
accgacaagtcggcgcgctcgaacgcgctcaatgaagcgcgcgcgaaggccaaggagcag
ttcgtcgccgacgggctcgacccgcaggcggtgatggccggcatcaagctggtcaagaag
ctcgaggccgaaatcgtccgcggcgcgatcctgaaggacggcacgcgcatcgacggccgt
tcgacgacgcagatccgcccgatcgaggccgaaacgcacttcctgccgcgcgcgcacggt
tcggcgcttttcacccgcggcgagacgcagacgatcgcgacctgcaccctcggcaccaag
gaagccgagcagatgatcgacggcctgaccggcctgcgttacgaaagcttcatgctgcac
tataacttcccgccctattcggtcggcgaagtcggccgcttcggtcctccgggacgccgc
gaggtcggccatggcaagctcgcgtggcgcgcgctgcacccggtgctgccgtcgaaggag
gatttcccctatacgatccgcctgaccagcgacatcaccgaatcgaacgggtcgtcgtcg
atggcgacggtgtgcggcggttcgctgtcgctgatggacgccggcgtgccgatcaagcgc
ccggtttcgggcatcgcgatgggcctgatcctcgaaggcaaggattatgcgatcctgtcg
gacatcctgggcgacgaggatcacctcggcgacatggatttcaaggtcgcgggcacgtcc
gaaggcatcaccacgatgcagatggacatcaagatcgccggcatcaccaaggaaatcttc
gaggcggcgctgaagcaggccaaggaaggccgcgcgcacatcctcggcgaaatgaacaag
gcgctcggcgagacgcgtagcgaattgtcggcgcacgcgccgcgcatcgagacgatcacc
atcgacaagtcgaagatccgcgacgtcatcggcaccggcggcaaggtgatccgcgagatc
gtcgcgaccaccggcgccaaggtcgacatcgacgacgaaggcatcatcaagatcgcctcg
tcggacccggcgcagatcgaagccgccaaggcgtggattctcggcatcgtcgaggagccc
gaggtcggcaagatctataacggcaaggtcgtcaatctcgtcgacttcggtgcgttcgtg
aatttcatgggcggcaaggacggtctggtccacgtcagcgaaatcaggaacgagcgcgtc
gaaaaggtcgccgacgtcctgtccgaagggcaggaggtcaaggtcaaggtgcttgagatc
gacccgcgcggcaaggtccgcctgtcgatgcgcgtcgtcgatcaagaaagcggcgaagag
ctcgaagacacccgcccggcgcgcgaaccgcgcggcgaccgcggtgatcgtggtccgcgc
cgcgaaggtggcgaccgcggccgtggcggccgcgaccgcgggccgcgccgcgacggcggc
gaccgcggcccgcgccgcgagcgcagcgacaatgtccccgaggacgagggccatgtgccc
gacttcctgaaggactga
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