Sphingopyxis indica: KNJ79_03840
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Entry
KNJ79_03840 CDS
T09492
Symbol
addB
Name
(GenBank) double-strand break repair protein AddB
KO
K16899
ATP-dependent helicase/nuclease subunit B [EC:
5.6.2.4
3.1.-.-]
Organism
sina
Sphingopyxis indica
Brite
KEGG Orthology (KO) [BR:
sina00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
sina03400
]
KNJ79_03840 (addB)
Enzymes [BR:
sina01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
KNJ79_03840 (addB)
DNA repair and recombination proteins [BR:
sina03400
]
Prokaryotic type
DSBR (double strand breaks repair)
HR (homologous recombination)
AddAB pathway proteins
KNJ79_03840 (addB)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
PDDEXK_1
Motif
Other DBs
NCBI-ProteinID:
WOF44086
LinkDB
All DBs
Position
817879..820851
Genome browser
AA seq
990 aa
AA seq
DB search
MADAKPTLFSIPVHRAFADALAQGLIDCYADGALGLAEGLILLPSNRARGAVQAAFVRAG
GKGLLMPRLAVIGDADLDESVGLALDALDGTEPIPPAIDPLRRRLLLAELIERHTPEGEA
PIGGAAAFQLADGLARVIDQLHYEEVRPRALTDLDLGAFAEHWQASLGRLRLLVDHWPAV
LAATGSIDRAERRNRLLDRVSAGWCAAPPARFVVAAGITTAAPAIARLLRTVAGMKRGMV
VLPGLDQAMAREQWDALGPTKADPENPARPLETHPQYHLKLLLDRMAVSREEVQPWPAAS
AFDGPEARTPFASLLFAPADYSARWQAAGDLSAATAGISGAVFADDGQEAQGIALLMREA
IETPGRTAALVTPDRALAERVAAALARWGIKVDDSAGQPLARTPPGALLLLLAELAADFD
SVKLVSLLGHPLVRKGEERTAWLDQLRRLDLILREPGLEPGWPGVTARIAGRVADPKARG
HGRAVEVEPWWRELAAALEAALAPFAAGSQPPAALLSALQAALDYLTGDAVWAGPDGRML
AGLFDQWALARGDGPARVDPGDFPAMLGQLLAQASVRPPYGGHPRLFIWGLLEARLQRAG
LMILGGLDEGRWPAATQPDPWLAPGIRRLLGLPAPERQQGLAAHDFAGALGASEIVVTRA
QRSGGDPAVASRFWLRLTALAGDLPEPAPGGVPLTRLAAMLDVPPGDPQPAARPAPCPPV
ANRPRKISVTAVDRLARDPYAYYANAMLGLSKLDPLSAAPDPRWRGTRVHKLFEDWVRDG
ATREGFEAELDALRHDPALDAIARAFWLPRVEPALRWAAAQLLDAEGRKPLGVELRGETV
VDGITLHGKADRIDRDAEGRLAIVDYKSGGAPSAKAAYDRLDNQLGLLGLIAQRGGMERI
DPAEVASLEYWSLRPDRRAGGAGKISNIYGPRSGLKSAGEAIDHAADALADLAARYLIGD
APFAPGEAAGYGDYDQLMRRDEWFGRGEGG
NT seq
2973 nt
NT seq
+upstream
nt +downstream
nt
atggctgatgccaagcccaccctcttctcgatcccggttcaccgggcctttgccgatgcg
ctcgcacaggggctgatcgactgctatgccgacggggcgctcgggctcgccgaggggctg
atcctgctcccaagcaatcgcgcgcgcggcgcggtgcaggcggcgttcgtgcgcgctggg
ggcaaggggctgctgatgccgcggctcgcggtgatcggcgacgccgacctcgacgaaagc
gtcgggctggcgctcgacgcgctggacgggaccgagccgatcccgcccgcaatcgacccg
ctgcgccgccgcctgctgctcgccgaactgatcgagcggcacacgccggagggggaggcg
ccgatcgggggcgccgccgccttccagctcgccgacggactcgcgcgcgtgatcgaccag
ctccattatgaggaagtgcgaccgcgcgcgctcaccgacctcgacctcggcgccttcgcc
gaacattggcaggcgtcgctcgggcggctgcgcctgctcgtcgatcattggcccgcggtg
ctcgcggcgacgggcagcatcgaccgcgccgagcgccgcaatcgcctgctcgaccgggtg
agcgcggggtggtgcgccgcgccgcccgcgcgcttcgtcgtcgcggcgggcatcaccacc
gccgcgcccgcgatcgcgcggctgctgcgcacggtcgccggcatgaagcgcggcatggtc
gtgctgccggggctcgaccaggcgatggcgcgcgagcaatgggacgcgctcggtccgacg
aaggccgatcctgaaaatcccgcgcgcccgctcgaaacgcacccgcaatatcatctgaag
ctgctgctcgaccgcatggcggtgagccgtgaggaggtgcagccatggcccgcggcatcc
gccttcgacgggcccgaggcgcgcacgccgttcgcctcgctcctcttcgcgcccgccgac
tatagcgcgcgctggcaggcggcgggcgacctgtcggcggcgaccgccggcataagcggc
gcggtgttcgccgacgacgggcaggaagcacaggggatcgcgctgctgatgcgcgaggcg
atcgagacgccgggacgcaccgcggcgctcgtcacccccgaccgcgcgcttgccgagcgc
gtcgcggctgcgctcgcgcgctgggggatcaaggtcgacgatagcgccggccagccgctg
gcgcgcaccccgcccggcgcgctgctgctgctgctcgccgaactcgcggccgatttcgat
tccgtgaagctggtgtcgctgctcggccatccgctcgttcgcaagggggaggagcgcacg
gcatggctcgaccagctgcggcggctcgacctgatcttgcgcgaacccggactcgagccg
gggtggccgggcgtgaccgcgcggattgcggggcgcgtcgccgatccgaaggcgcgcggg
catgggcgcgcggtcgaggtcgaaccatggtggcgcgaactggcggccgcgctcgaagcc
gcgctcgcgcccttcgcggcgggatcgcagccccccgcggccctgctgtcggccttgcag
gcggcgctcgactatctgaccggcgatgcggtctgggccggccccgacgggcggatgctc
gccgggctgttcgaccagtgggcgctcgcgcgcggcgacggaccggcgcgcgtcgatccc
ggcgacttccccgcgatgctggggcagttgctcgcgcaggcgagtgtgcggccgccctat
ggcgggcatccgcggctgttcatctgggggctgctcgaggcgcggcttcagcgcgccggc
ctgatgatcctcggcgggctcgacgaagggcgctggcccgccgcgacgcagcccgacccg
tggctcgcgcccggcatccgccgcctcctcggcctgcccgcgcccgagcggcagcaggga
cttgcggcgcatgatttcgcgggcgcgctcggcgcgagcgagatcgtcgtcacgcgcgcg
cagcgcagcggcggcgaccccgcggtcgcctcgcgcttctggctgcggctgaccgcgctc
gcgggcgaccttcccgaacccgcacccggcggcgttccgctcacccgcctcgccgcgatg
ctcgacgtgccgccgggcgacccgcaaccggcggcgcgccccgcgccctgtccgcccgtg
gccaaccgcccgcgcaagatcagcgttaccgcggtcgaccggctcgcgcgcgatccctat
gcctattatgcgaacgcgatgctcggcctgtcgaagctcgatcccttgagcgcggcgccc
gatccgcgctggcgcggcacgcgcgttcacaagctgttcgaggactgggtgcgcgacggc
gcgacgcgcgaggggttcgaggccgaactcgacgcgctgcgccacgaccccgcgctcgac
gcgatcgcgcgcgccttctggctgccgcgcgtcgagccggcgctgcgctgggcggcggcg
cagctgctcgatgcggaggggcgcaagccgctcggcgtcgagctgcgcggcgaaacggtg
gtcgacgggatcacgctgcacggcaaggccgaccgcatcgaccgcgacgccgagggacgg
ctcgcgatcgtcgactataaatcgggcggggcgccgagtgcgaaggcggcctatgacagg
ctcgacaaccagctcggcctgctcggcctgatcgcgcagcgcggcggcatggagcggatc
gaccccgccgaggtcgcgagcctcgaatattggagcctgcgtcccgaccgccgcgcgggc
ggcgccggcaaaatttcgaacatttatggtccgcgcagcgggctgaagagcgccggggaa
gcgatcgaccatgccgccgacgcgctcgccgacctcgccgcgcgctacctgatcggcgat
gcgcccttcgcgcccggcgaggccgcgggctatggcgattacgaccagctgatgcgccgc
gacgaatggttcgggcgcggggagggcgggtga
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