Sphingopyxis indica: KNJ79_04615
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Entry
KNJ79_04615 CDS
T09492
Symbol
rimO
Name
(GenBank) 30S ribosomal protein S12 methylthiotransferase RimO
KO
K14441
ribosomal protein S12 methylthiotransferase [EC:
2.8.4.4
]
Organism
sina
Sphingopyxis indica
Brite
KEGG Orthology (KO) [BR:
sina00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03009 Ribosome biogenesis [BR:
sina03009
]
KNJ79_04615 (rimO)
Enzymes [BR:
sina01000
]
2. Transferases
2.8 Transferring sulfur-containing groups
2.8.4 Transferring alkylthio groups
2.8.4.4 [ribosomal protein uS12] (aspartate89-C3)-methylthiotransferase
KNJ79_04615 (rimO)
Ribosome biogenesis [BR:
sina03009
]
Prokaryotic type
ribosomal protein modification factors
KNJ79_04615 (rimO)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Radical_SAM
UPF0004
TRAM_2
TRAM
Motif
Other DBs
NCBI-ProteinID:
WOF44216
LinkDB
All DBs
Position
complement(1001268..1002638)
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AA seq
456 aa
AA seq
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MITRTLPAQPKIGMVSLGCPKALVDSERILTRLRADGYGLSPDYAGADVVLVNTCGFLDS
AKEESLEAIGEAMAENGRVIVTGCMGNEAEAIRARFPKVLAVTGAHQYEQVVDAVHDAAP
PTQGPFVDLVPEGGLKLTPRHYSYLKISEGCNHSCSFCIIPDLRGKLVSRRIDAVLREAE
KLVAAGTKELLVISQDTSAYGVDIRHDPRQWHGREVRAHMTDLARELGQLRTGEGHAPWV
RLHYVYPYPHVDAVIPLMAEGLLTPYLDIPFQHASPSVLKRMKRPANEAKVLERLKAWRA
IAPDIAIRSSFVVGFPGETEADFQYLLDWLDEAQLDRVGAFRFEPVAGAQANALDNPVPE
EVKEERYQRIMAKTAAISAAKLEAKIGRTLPVIIDEVGEPDEEGSIGATGRSQADAPEID
GHVYLRDVAASLKAGDIVDVVVEDADEHDLYGVVAA
NT seq
1371 nt
NT seq
+upstream
nt +downstream
nt
atgataaccaggaccctccccgcccagccgaaaatcggcatggtttcgctcggctgcccg
aaggcgctcgtcgacagcgaacggattctaaccaggctccgcgccgacggctatggcctg
tcgcccgattatgcgggcgccgacgtcgtgctcgtcaacacctgcggcttcctcgattcg
gcgaaggaagaaagcctcgaggcgatcggcgaggcgatggccgagaatggccgcgtcatc
gtcaccggctgcatgggcaatgaggccgaggcgatccgcgcgcgcttccccaaggtgctc
gcggtcaccggcgcgcatcaatatgagcaggtcgtcgatgccgtccacgacgccgcaccg
ccgacgcagggaccgttcgtcgatctcgtccccgagggcgggctgaagctgacgccgcgc
cactacagctatctgaagatctccgagggctgcaaccacagctgttccttctgcatcatc
cccgacctgcgcggcaagctcgtcagccgccgcatcgacgcggtgctgcgcgaagccgaa
aagctcgtcgcggcgggaacgaaggagttgctggtcatcagccaggatacctcggcctat
ggcgtcgatatccgccacgacccgcgccagtggcacggtcgcgaggtgcgcgcgcacatg
accgacctcgcgcgcgaactcggccagctccgcaccggcgagggccacgcgccatgggtg
cgcctccactatgtctatccctatccgcacgtcgacgcggtgatcccgttgatggccgag
gggctgctcaccccctatctcgacattcccttccagcacgcgagcccgagcgtcctcaag
cgcatgaagcgccccgcgaacgaagccaaggtgctcgagcggctcaaggcatggcgcgcc
atcgcccccgacatcgcgatccggtcgagcttcgtcgtcggcttccccggcgaaaccgag
gcggactttcaatatctcctcgactggctcgacgaagcgcagctcgaccgcgtcggcgcg
ttccgcttcgaacccgtcgcgggcgcgcaggcgaatgcgctcgacaatccggtgcccgag
gaggtcaaggaagaacgctatcagcggatcatggccaagaccgcggcgatcagcgccgcc
aagctggaagccaaaatcggccgcaccctccccgtcatcatcgacgaggtgggcgagccc
gacgaagagggcagcatcggcgcgaccggccgcagccaggccgacgcgccggaaatcgac
ggccatgtctatctgcgcgacgtcgccgcgagcctgaaggcgggcgatatcgtcgatgtc
gtcgtcgaggacgccgacgagcatgatctttacggggtggttgcggcctga
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