Sphingopyxis indica: KNJ79_08195
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Entry
KNJ79_08195 CDS
T09492
Symbol
dnaE
Name
(GenBank) DNA polymerase III subunit alpha
KO
K02337
DNA polymerase III subunit alpha [EC:
2.7.7.7
]
Organism
sina
Sphingopyxis indica
Pathway
sina03030
DNA replication
sina03430
Mismatch repair
sina03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
sina00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
KNJ79_08195 (dnaE)
03430 Mismatch repair
KNJ79_08195 (dnaE)
03440 Homologous recombination
KNJ79_08195 (dnaE)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
sina03032
]
KNJ79_08195 (dnaE)
03400 DNA repair and recombination proteins [BR:
sina03400
]
KNJ79_08195 (dnaE)
Enzymes [BR:
sina01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.7 DNA-directed DNA polymerase
KNJ79_08195 (dnaE)
DNA replication proteins [BR:
sina03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
DNA polymerase III holoenzyme
KNJ79_08195 (dnaE)
DNA repair and recombination proteins [BR:
sina03400
]
Prokaryotic type
SSBR (single strand breaks repair)
MMR (mismatch excision repair)
DNA polymerase III holoenzyme
KNJ79_08195 (dnaE)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_pol3_alpha
DNA_pol3_finger
PHP
HHH_6
DUF655
tRNA_anti-codon
COE1_HLH
T2SSK
Motif
Other DBs
NCBI-ProteinID:
WOF44849
LinkDB
All DBs
Position
1742438..1745929
Genome browser
AA seq
1163 aa
AA seq
DB search
MAYCPFVPLRVFSSYTMLEGAIDPKAIAKAARERGFPAVAVADRNGLYGVMAFGEACRAA
GVQPIVGAFLSIARPGQRLANGAPLIDWLALYAQDEAGYNNLCALVSAAHLDRPIEQEPH
VALSALAGRTDGLICLTGGGEGALARLLADEQKTAADDYVEQLEALFGGRLYIELSRRGD
ATEKAAEAALIDLAYARALPLVATNPANFVEPQFHPAHDAMLCIAQSAYVESEDRRASNP
EAWLKPAEAMEDAFSDLPEAIRNTLVIAQRCAFMAPKRKPILPSLAGDREGEAAQLKADA
HAGLEARLALYEGLTAEERQAYVERLDFEIDVITQMGFPGYFLIVADFIKWAKAHDIPVG
PGRGSGAGSVVAWALTITDLDPLKLGLLFERFLNPERVSMPDFDIDFCETRRGEVIRYVQ
EKYGRDTVAQIITFGKLKARAVLKDTGRVLQMSYGQVDRLAKLVPNHPTDPWTLERALNG
VSELMTEYKQDDGVRRLFDMARQLEGLPRHSSTHAAGVVIGDRPLDQLVPLYRDPRSDMP
VTQFDMKFVETAGLVKFDFLGLKTLSVLKEARRLLALRGIDVDLDTLAWDDPGVYELLQR
GDTVGVFQLESEGMRRTLSAVKPTNFGDIIALVALYRPGPMDNIPLFGARKNGREPIAYP
HPLLEGILAETYGIFVYQEQVMQAAQILAGYSLGGADLLRRAMGKKIQAEMDAQRETFVK
GCGEHNGIEAKKANELFDLIDKFAGYGFNKSHAAAYALLAYQTAWLKAHHPHEFFAASMS
FDSHQTDKLSIFIDDMRRLDIAVAPPSVNESEADFAVSQTDEGLAVRYALGALKGVGEKA
MEALVAERRARGDFASLDDFASRIDPKLLNRRQIEALAAAGAFDAIEPDRPRAFAGAEAL
LACANSSAHERSTGQGGLFGGDVDLAPVLQLPAAEPWTLADRMTREKEAFGFYFSAHPVE
QYEAILAARGARTYGDICENVEMTPGTRVPMTMAAMVESARARVSQRGNRFLNLTLSDRS
GQFQSSCFDEGAGKILEALAAEGGCALLSVELDLLEGEETPRVTVRGAQSLADIAASAAL
QLTCRVEQASAVAEMAALLERRDDARGRVILTTDDPDTGEAIRIHLGRTFALGPDVVDRL
RLVAGLIDPSLSLHTPRDFRVRS
NT seq
3492 nt
NT seq
+upstream
nt +downstream
nt
atggcctactgccccttcgttccgcttcgcgtcttttccagctacacgatgctcgaaggg
gcgatcgaccccaaagccattgcaaaggctgcgcgcgagcgggggtttccggcggtcgcg
gtcgccgaccgtaacgggctctatggcgtcatggcctttggcgaggcgtgcagggctgcc
ggggtgcagccgatcgtcggcgccttcctcagcatcgcgcggccggggcagcggctggcc
aacggcgcgccgctgatcgactggctcgcactctatgcgcaggacgaggcgggctataat
aatctctgcgcgctcgtctcggcagcgcacctcgaccggccgatcgagcaggagccgcat
gtcgcgctgtcggcgcttgcgggcaggaccgacgggctgatctgcctgaccggcggcggc
gagggcgcgctcgcgcggctgctcgccgacgagcagaagaccgcggccgatgattatgtc
gagcaactcgaagccttgttcggcggacggctctatattgaactctcgcggcgcggcgac
gccaccgaaaaggcggccgaggcggcgctgatcgacctggcctatgcgcgcgcgctgccg
ctggtcgcgaccaatcccgccaatttcgtcgaaccgcaattccaccccgcgcacgatgcg
atgctgtgcatcgcgcagtcggcctatgtcgaaagcgaagaccggcgcgcctcgaatccc
gaggcgtggctgaaacccgccgaggcgatggaagatgccttttccgacctgcccgaagcg
atccgcaacacgctcgtcatcgcgcagcgctgcgccttcatggcgccgaagcgcaagccg
atcctgccgagcctcgcgggcgaccgcgagggcgaagcagcacagctcaaggctgacgcc
cacgccgggctcgaggcgcggctcgcgctctatgaggggctgaccgccgaggagcggcag
gcctatgtcgagcggctcgatttcgagatcgacgtcatcacccagatgggttttccgggc
tatttcctgatcgtcgccgatttcatcaaatgggcgaaggcgcacgatattccggtgggg
ccggggcgcgggtcgggcgcgggcagcgtcgtcgcctgggcgctgacgatcaccgacctc
gatccgctcaagctcggcctgctgttcgagcgcttcctcaatcccgagcgcgtgtcgatg
cccgacttcgacatcgacttctgcgaaacgcggcgcggcgaggtaatccgttatgtgcag
gaaaaatacggccgcgatacggtcgcgcagatcatcaccttcggaaagctgaaggcgcgc
gcggtcctgaaggataccggccgcgtgctccagatgagctatggccaggtcgaccggctc
gcgaagctggtgcccaatcatcccaccgatccctggacgctcgagcgcgcgttgaacggc
gtttcggagctgatgaccgaatataagcaggacgacggggtgcgccggctgttcgacatg
gcgcgccagttggaaggtctgccgcggcacagttcgacccacgcggccggcgtggtgatc
ggcgaccgcccgctcgaccagctcgtcccgctctatcgcgacccgcgctcggacatgccg
gtgacgcagttcgatatgaagttcgtcgagaccgcggggctggtcaaattcgacttcctc
ggcctcaagacgctttcggtgctcaaggaagcgcggcgattgctcgcgctgcgcggcatc
gacgtcgatcttgacacgctcgcgtgggacgacccgggcgtatacgaactgctccagcgc
ggcgacacggtcggcgtgttccagctcgaatccgaagggatgcggcgcacgctgtcggcg
gtgaagccgaccaatttcggcgacatcatcgcgctcgtcgcgctctatcgcccggggccg
atggacaatattccgctgttcggcgcgcgcaagaacgggcgcgagccgatcgcctatccg
cacccgctgctcgaaggcatcctcgccgaaacctatggcattttcgtctatcaggaacag
gtgatgcaggcggcgcagatcctggcgggctacagcctcggcggcgccgacctgctccgt
cgcgcgatgggcaagaagatccaggcggagatggacgcgcagcgcgaaacctttgtgaag
ggttgcggcgaacataatggaatcgaggcgaaaaaagcgaatgagctgttcgacttgatc
gacaagttcgcgggctatggcttcaacaagagccatgctgcggcctatgcgctgctcgct
tatcagaccgcgtggctgaaggcgcatcatccgcatgaatttttcgcagcctcgatgtcg
ttcgacagccaccagaccgacaagctgtcgatcttcatcgacgatatgcggcggctcgac
atcgcggtcgcgccgccgtcggtgaacgagagcgaggccgatttcgcagtgagccagacc
gatgaaggactcgcggtgcgctacgcgctcggcgcgctcaagggcgtcggcgagaaagcg
atggaagcactcgtcgccgaacggcgcgcgcgcggcgatttcgcgagcctcgacgatttc
gcgagccgcatcgacccgaaactgctcaaccgccgccagatcgaggcacttgccgccgcg
ggggccttcgacgcgatcgagcccgaccggccgcgcgcctttgccggcgccgaggcgctg
ctcgcctgcgcgaacagttcggcgcacgagcgatcgaccgggcagggcggattgttcggc
ggcgacgtcgacctcgcacccgtgctccagcttcccgcggccgaaccgtggacgctcgcc
gatcggatgacccgtgagaaggaggcattcggcttttatttctccgcgcacccggtcgag
caatatgaggccatcctcgcggcgcgcggcgcgcgcacctatggcgacatctgcgaaaat
gtcgaaatgacgccgggcacgcgcgtcccgatgacgatggcggcgatggtcgaaagcgcg
cgcgcgcgcgtctcgcagcgcggcaatcgcttcctcaacctgacgctgtcggaccgcagc
ggccaattccagtcgagctgcttcgacgagggtgcgggcaagattttggaagcgctcgcg
gccgagggcggctgcgcgctgctgtcggtcgaactcgacttgctcgaaggtgaggaaacg
ccgcgcgtcacggtgcgcggtgcgcagtcgctcgccgacatcgcggcgagtgccgcgctg
caattgacgtgccgcgtcgaacaggcaagcgcggtcgccgaaatggcggcgctgctcgaa
cggcgcgacgatgcgcgcgggcgtgtgatcctgaccaccgacgatcccgacacgggcgaa
gcgatccgcatccacctcggccgcactttcgcgcttggccccgacgtcgtcgaccggctg
cggctggtcgccgggctgatcgatccgtcgctgtcgctccataccccgcgcgatttccgg
gttcgaagctga
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