Sphingopyxis indica: KNJ79_11115
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Entry
KNJ79_11115 CDS
T09492
Name
(GenBank) ribonuclease J
KO
K12574
ribonuclease J [EC:3.1.-.-]
Organism
sina
Sphingopyxis indica
Pathway
sina03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
sina00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
KNJ79_11115
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
sina03019
]
KNJ79_11115
Messenger RNA biogenesis [BR:
sina03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
KNJ79_11115
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Ortholog
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Gene cluster
GFIT
Motif
Pfam:
RNase_J_b_CASP
Lactamase_B_2
Lactamase_B
RNase_J_C
RMMBL
Anti-Pycsar_Apyc1
RsbRD_N
Motif
Other DBs
NCBI-ProteinID:
WOF41805
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Position
complement(2339781..2341415)
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AA seq
544 aa
AA seq
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MTVPGKELLFLALGGSGEIGMNANLYGCDGKWIMLDLGVSFGTPDYPGIDIVMPDLEFIE
DRRDNLLGIVLTHGHEDHIGALPYLAAELGVPLYANRFTAGLIAHKLAEEGLEKEVEVRT
VDIDARFELGPFRLRMVPLAHSILEMSAVVIDTPYGRVFHTGDWKLDEEPILGEPATAAM
LSAIGDEGVDVLVCDSTNVFNTQPSGSEGDLRAGLVAAVGAAKGRVVVTTFASNAARLHT
LGEVARATGRSLCVAGRSLDRILSVARSVGYLRDFPPTVDFDEAMRLPRDQVMVIATGGQ
GEPRAALARMAGDVHQIKLEAGDTVVFSSKQIPGNEIAIGRIMNQLAAKDVLTVTEKQAH
IHVSGHPGKPELAALYGWLRPKLIVPVHGEVRHMHEQARFGLEQGIPAALVQENGDLCRL
APGAATIVERVRSGRLVLDGDVILPADGETLNERRKLSWNGQISVAVVLGARGYIGSEIQ
YRGVPVEDDREAFLDEMNEAAEQAASKKARDRDALKEAIRLGVRRVATDWTGKKPIVDVL
IVDV
NT seq
1635 nt
NT seq
+upstream
nt +downstream
nt
atgaccgtccccggcaaggaattgctctttctcgcgctcggcgggtcgggcgagatcggc
atgaacgccaatctttatggctgcgacggcaagtggatcatgctcgatctgggcgtcagt
ttcgggacgcccgactatccgggcatcgacatcgtgatgcccgacctcgaattcatcgag
gatcgccgcgataatctgctcggcatcgtgctgacgcatgggcacgaggatcatatcggc
gcgctcccctatcttgccgccgaactcggcgtgccgctctatgccaaccgcttcaccgcg
gggctgatcgcgcacaagctcgccgaagaggggctggagaaagaggtcgaggtccgcacc
gtcgacatcgacgcgcgcttcgaactcgggccgttccgcctgcgcatggtgccgctcgcg
cactcgattctcgaaatgagcgcggtggtgatcgacacgccctatggccgcgtgtttcac
accggcgactggaagctcgacgaggaaccgatcctcggcgagcccgcgactgcggcgatg
ctgtcggcgatcggcgacgagggggtcgacgtgctggtgtgcgattcgaccaacgtcttc
aacacccagccatcgggcagcgaaggcgacctgcgcgcggggctcgtcgcggcggtcggc
gcggcgaaggggcgggtggtggtgaccactttcgcctcgaacgccgcgcggctgcacacg
ctgggcgaggttgcgcgcgcgaccgggcgcagcctgtgcgtcgcggggcgctcgctcgac
cgtatcctcagcgtcgcgcgctcggtcggctatctcagggatttcccgccgacggtcgat
ttcgacgaagcgatgcggctgccgcgcgaccaggtgatggtgatcgcgaccggcgggcag
ggcgagccgcgcgccgcgctcgcgcgcatggcgggcgacgtccaccagatcaagctcgag
gccggcgacaccgtcgtcttctcctccaagcagatcccgggcaacgagatcgcgatcggg
cggatcatgaaccagcttgccgcgaaggatgtgctgaccgtcaccgaaaagcaggcgcat
atccatgtcagcggccatccgggcaagcccgagctcgcggcgctctatggctggctgcgg
ccgaagctgatcgtgccggtgcatggcgaagtccggcacatgcacgagcaggcgcgcttc
gggctcgaacaggggattccggcggcgctggtgcaggaaaatggcgacctttgccgcctg
gcaccgggcgcggcgacgatcgtcgagcgggtgcggtcggggcggctcgtgctcgacggc
gacgtgatcctgcctgcggatggcgagacgctgaacgagcggcgcaagctgtcgtggaac
ggccagatttcggttgcggtggtgctcggcgccagaggctatatcggtagtgaaatccag
tatcgcggcgtgccggtcgaggacgaccgcgaggcctttctcgacgagatgaacgaggcg
gccgagcaggcggcgtcgaaaaaggcgcgcgaccgcgatgcgctgaaggaagcgatccgc
ctcggcgtgcgccgcgtcgcgaccgactggaccggaaaaaagccgatcgtcgacgtgctg
atcgtggacgtctga
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