Sphingopyxis indica: KNJ79_14940
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Entry
KNJ79_14940 CDS
T09492
Name
(GenBank) DEAD/DEAH box helicase
KO
K11927
ATP-dependent RNA helicase RhlE [EC:
5.6.2.7
]
Organism
sina
Sphingopyxis indica
Pathway
sina03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
sina00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
KNJ79_14940
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
sina03019
]
KNJ79_14940
Enzymes [BR:
sina01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
KNJ79_14940
Messenger RNA biogenesis [BR:
sina03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
KNJ79_14940
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
Utp25_C
CMS1
ERCC3_RAD25_C
Motif
Other DBs
NCBI-ProteinID:
WOF42463
LinkDB
All DBs
Position
complement(3192457..3193827)
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AA seq
456 aa
AA seq
DB search
MEFKDFGLHADIERALTAKRYSQPTPIQQQAIPVLLEGRDLCGIAQTGTGKTAAFSLPSL
DYLLNNPKPRSPRGCRMLVLSPTRELAAQIAQSCRDYGRFTKFSVMTVFGGVPINKQIRE
LGQGVDILVATPGRLLDLVDQRALRLDDVEIFVLDEADQMMDMGFIHSLRRVAKLLPKER
QNLFFSATMPKEIAALAQQFLHDPVTVSVAPQATTAEKIRQQVTFVEQKEKQALLHHVLK
IEDIDRALIFTRTKHGADRVVRHLKGAGIDAFAIHGNKSQAQRTTALQAFRSGQVRLLVA
TDIAARGIDVSGVSHVINFEIPNVPEQYVHRIGRTARAGAEGIAISFVAPDERPYLRDIE
RVTRTKAEPVKLPDGFGEMVRNLPKPVNPPRNTGGKGRNPQRQREEALRGKAGGHRDGGQ
PRREGAGDGAQPQRKRRFRPRRGGVGAHKGAVTRVG
NT seq
1371 nt
NT seq
+upstream
nt +downstream
nt
atggaattcaaagacttcggcctccacgccgacatcgagcgtgcgctgacggccaagcgc
tacagccagccgaccccgatccagcaacaggcgatcccggtgctgctcgagggccgcgac
ctgtgcggcatcgcgcagaccgggacgggcaagaccgctgccttctcgctgccctcgctc
gactatctgctcaacaacccgaaaccgcgcagcccgcgcggctgccggatgctcgtgctc
tctccgacgcgcgagctcgccgcgcagatcgcgcagagctgccgcgactatggccgcttc
acgaagttcagcgtgatgaccgtcttcggtggcgtcccgatcaacaagcagatccgcgaa
ctggggcagggcgtcgatatcctcgtcgccacgccgggccgcctgctcgaccttgtcgac
cagcgcgcgctgcgcctcgacgacgtcgaaatcttcgtgctcgacgaagccgaccagatg
atggacatgggcttcatccactcgctgcgccgcgtcgcgaagctgctccccaaagagcgg
cagaatctcttcttttcggcgacgatgcccaaggaaatcgccgcgctcgcgcagcagttc
ctgcacgatccggtcaccgtctcggtcgcgccgcaagcgacgaccgccgaaaagatccgc
cagcaggtgaccttcgtcgagcagaaggagaagcaggcgctgctccatcatgtgctgaag
atcgaggacatcgaccgggcgctgatcttcacgcgcaccaagcatggcgccgaccgcgtc
gtgcgccacctgaagggcgcgggtatcgacgctttcgcgatccacggcaacaagagccag
gcgcagcgcaccaccgcgctccaggccttccgttcggggcaggtcaggctgctcgtcgcg
accgacatcgccgcgcgcggcatcgacgtgtcgggggtcagccatgtgatcaacttcgag
attccgaacgtccccgaacaatatgtccaccgcatcggccgcaccgcgcgcgccggggcg
gagggcatcgcgatcagcttcgtcgcgcccgacgagcgcccctatctgcgcgacatcgag
cgcgtgacgcggacgaaggccgagccggtcaagctgcccgacggtttcggcgagatggtc
cgcaacctgcccaagccggtcaatccgccgcgcaacaccggcggcaagggccgcaacccc
cagcgccagcgcgaggaagcgctgcgcggcaaggcgggcggccatcgcgacggcggccag
ccgcgccgcgagggtgcgggcgatggcgcccagccgcagcgcaagcgccgcttccgcccg
cgtcgcggcggcgtcggcgcacacaagggcgccgtgacacgcgtcggttga
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