Sphingopyxis indica: KNJ79_15775
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Entry
KNJ79_15775 CDS
T09492
Symbol
ruvB
Name
(GenBank) Holliday junction branch migration DNA helicase RuvB
KO
K03551
holliday junction DNA helicase RuvB [EC:
5.6.2.4
]
Organism
sina
Sphingopyxis indica
Pathway
sina03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
sina00001
]
09120 Genetic Information Processing
09124 Replication and repair
03440 Homologous recombination
KNJ79_15775 (ruvB)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
sina03400
]
KNJ79_15775 (ruvB)
Enzymes [BR:
sina01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
KNJ79_15775 (ruvB)
DNA repair and recombination proteins [BR:
sina03400
]
Prokaryotic type
DSBR (double strand breaks repair)
HR (homologous recombination)
RecBC pathway proteins
KNJ79_15775 (ruvB)
RecFOR pathway proteins
KNJ79_15775 (ruvB)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RuvB_N
AAA_lid_4
RuvB_C
AAA
AAA_5
TIP49
Mg_chelatase
AAA_16
AAA_3
AAA_22
Sigma54_activat
AAA_14
AAA_17
AAA_2
AAA_18
nSTAND3
Rad17
TsaE
RNA_helicase
NTPase_1
AAA_28
AAA_33
NB-ARC
AAA_24
Bac_DnaA
NACHT
ABC_tran
Sigma54_activ_2
IstB_IS21
Motif
Other DBs
NCBI-ProteinID:
WOF42618
LinkDB
All DBs
Position
3387041..3388063
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AA seq
340 aa
AA seq
DB search
MTDLTTPIRTPEDADAALRPKSLAEFVGQAAARENLRIFIEAAKARSDALDHVLFFGPPG
LGKTTLAQIVARELGVGFRSTSGPVIAKAGDLAALLTNLEDGDVLFIDEIHRLSPAVEEI
LYPAMEDRALDIMIGEGPSARSVRIDLPKFTLVGATTRQGLLTTPLRDRFGIPVRLNFYT
HAELEQVIGRAARLLGLGIAPDGALEIAKRSRGTPRIAGRLLRRVRDFATVAGAATVDAK
VADAALNRLEVDALGLDAMDRRYLTMIADIYRGGPVGVETLAAGLSEPRDTIEDVIEPYL
LQIGLIARTARGRMLNASAWKHLGLNPPAGVQDGLFDQGK
NT seq
1023 nt
NT seq
+upstream
nt +downstream
nt
gtgaccgacctcaccaccccgatccgcacccccgaggatgccgatgccgcgctgcggccc
aagtcgcttgccgaattcgtcgggcaggcggcggcgcgggagaatctgcggatcttcatc
gaggcggcgaaggcgcgttcggatgcgctcgaccatgtgctctttttcgggccgccgggg
ctcggcaagacgacgctcgcgcagatcgtcgcgcgcgaactgggagtcggctttcgctcg
acctcggggccggtgatcgccaaggcgggcgacctcgcggcattgctcaccaatctggaa
gacggcgatgtgctgttcatcgacgagatccaccgcctgtcgcccgcggtcgaggagatc
ctctatcccgcgatggaggaccgcgcgctcgacatcatgatcggtgagggaccgtcggcg
cgcagcgtgcgcatcgacctgcccaaattcaccctcgtcggcgcgacgacgcggcagggg
ctgctcacgacgccgctgcgcgaccgcttcggtattccggtgcggctcaatttctatacg
cacgccgaactcgaacaggtgatcggccgcgcggcgcggctgctcggcctcggcatcgcg
cccgacggcgcgctcgagatcgcgaagcggtcacgcggcacgccgcggatcgccgggcgg
ctgctgcgccgcgtgcgcgatttcgcgaccgttgccggcgccgcgacggtcgatgcgaag
gttgccgacgccgcgctcaaccggctcgaggtcgatgcgctcgggctcgacgcgatggac
cgccgttacctgacgatgatcgccgacatctatcgcggcgggcccgtgggggtcgaaacg
ctcgcggcggggctttccgaaccgcgcgacacgatcgaggatgtgatcgagccctatctg
ctccagatcggcctgatcgcgcgcaccgcacgcgggcggatgctcaatgcgagcgcgtgg
aagcaccttggcctcaacccgcccgcgggagtgcaggacgggctgttcgaccagggcaaa
tga
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