Sphingopyxis indica: KNJ79_16320
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Entry
KNJ79_16320 CDS
T09492
Symbol
xth
Name
(GenBank) exodeoxyribonuclease III
KO
K01142
exodeoxyribonuclease III [EC:
3.1.11.2
]
Organism
sina
Sphingopyxis indica
Pathway
sina03410
Base excision repair
Brite
KEGG Orthology (KO) [BR:
sina00001
]
09120 Genetic Information Processing
09124 Replication and repair
03410 Base excision repair
KNJ79_16320 (xth)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
sina03400
]
KNJ79_16320 (xth)
Enzymes [BR:
sina01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.11 Exodeoxyribonucleases producing 5'-phosphomonoesters
3.1.11.2 exodeoxyribonuclease III
KNJ79_16320 (xth)
DNA repair and recombination proteins [BR:
sina03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
AP endonucleases
KNJ79_16320 (xth)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Exo_endo_phos
A6_N
Motif
Other DBs
NCBI-ProteinID:
WOF42712
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All DBs
Position
complement(3493154..3493921)
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AA seq
255 aa
AA seq
DB search
MKIATFNINGIKARLPRLVEWLEETQPDIVCLQELKSSDETIPAREIEAAGYGALYHGQK
GFNGVAILARGAEPVEIQRGLAGEEDEQSRYLEADIFGVRVASIYLPNGNPQPGPKFDYK
LRWMARLRARAQALLAAEIPAVLAGDYNVIPHDDDVWDPRAMAADALMQPESRDAYFRIL
GDGWTDALRSRHPAGHVWTFWDYQAGGWQRDHGFRIDHLLLSPAMADRLIDARVDKDYRG
REKASDHAPTWAQFR
NT seq
768 nt
NT seq
+upstream
nt +downstream
nt
atgaaaatcgcgacgttcaatatcaacggcatcaaggcacgcctgccgcgcctcgtcgaa
tggctcgaagagacgcagcccgacatcgtgtgccttcaggaactcaagtcgagcgacgag
acgatcccggccagggagatcgaggcggcgggctatggcgcgctctatcacgggcaaaag
gggttcaacggcgtcgcgatcctcgcgcgcggggccgagccggtcgagatccagcgcggc
ctcgccggcgaggaggatgagcagtcgcgctatctcgaagccgatatattcggcgtgcgc
gtcgcgtcgatctatctgcccaacggcaatccgcagcccggccccaaattcgattacaag
ctgcgctggatggcgcggctgcgcgcgcgcgcgcaggccttgctggccgccgaaatcccc
gccgtgctcgcgggcgactacaatgtcatcccgcacgacgacgacgtctgggacccgcgc
gccatggccgccgacgcgctgatgcagcccgaatcgcgcgacgcatattttcgcatcctc
ggcgacggctggaccgacgcgctgcgcagccgccaccccgcggggcatgtctggaccttc
tgggactatcaggcgggcggctggcaacgcgaccatggtttccgcatcgaccatctgctg
ctcagcccggcgatggccgaccggctgatcgacgcgcgggtcgacaaggactatcgcggc
cgcgaaaaggcgagcgaccacgcgccgacctgggcgcagttccgatag
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