Sphingopyxis indica: KNJ79_18770
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Entry
KNJ79_18770 CDS
T09492
Symbol
rpoN
Name
(GenBank) RNA polymerase factor sigma-54
KO
K03092
RNA polymerase sigma-54 factor
Organism
sina
Sphingopyxis indica
Pathway
sina02020
Two-component system
sina02040
Flagellar assembly
Brite
KEGG Orthology (KO) [BR:
sina00001
]
09130 Environmental Information Processing
09132 Signal transduction
02020 Two-component system
KNJ79_18770 (rpoN)
09140 Cellular Processes
09142 Cell motility
02040 Flagellar assembly
KNJ79_18770 (rpoN)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
sina03021
]
KNJ79_18770 (rpoN)
Transcription machinery [BR:
sina03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Sigma factors
KNJ79_18770 (rpoN)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Sigma54_DBD
Sigma54_CBD
Sigma54_AID
HTH_IclR
Sigma70_r4
HTH_31
HTH_3
HTH_23
HTH_AraC
MarR_2
HTH_38
HTH_Crp_2
Phage_CII
Motif
Other DBs
NCBI-ProteinID:
WOF43139
LinkDB
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Position
complement(3973925..3975379)
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AA seq
484 aa
AA seq
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MALGPRLDLRQSQSLVMTPQLQQAIKLLALSNLELESYLAEALEGNPLLDTASAEGEGGA
DEPADEAPAAAAEARETDAALSSDAGTADDLDVDYAEERFHHDSASDSVGLSGSSEGIDF
DSFAGADETLYDHLLAQVGERFSGLEAMVAEQLVALIDEAGYLRADLPELAQRLGVPLAL
VEAVLAGVQAFDPAGVGARDLAECIAIQAREADRYDPAMQCMVAHLDLVAKGAFPQLKRI
CGVDDEDLADMIRELRGYDPKPGLRFGGGVAQAVVPDLYVRRTAEGWLVEVNSGTLPRLL
VNRRYYDELAQGAAARNKAWLSEQLAGANWLVRALDQRQRTIVRVASEIVKQQEGFFLHG
VAHMRPLTLRQVAEEIGMHESTVSRVTSNKYLSCARGLFELKYFFSSGISATAGDGAVSA
EAVKSRIRALIDAEDPKAILSDEVIAQKLAAEGHDIARRTVVKYREAMGYGSSVQRRRQK
ALAG
NT seq
1455 nt
NT seq
+upstream
nt +downstream
nt
ttggctctgggtccccgcctcgatttacgccagtcgcaatcgctggtgatgacgccgcag
ttgcagcaggcgatcaagctgctcgcgctgtcgaacctcgaactcgaatcctatctggcc
gaagcgctcgaaggcaatccgctgctcgatacggcatcggcagagggcgagggcggcgcc
gacgagccggccgacgaagcgcccgccgccgcggccgaagcgcgcgagaccgacgccgcg
ctgtcgtccgacgccgggaccgccgacgatctcgacgtcgattacgccgaggagcgcttc
catcacgacagcgccagcgattcggtcggcctgtcggggtcgagcgaaggaatcgacttc
gacagtttcgccggcgccgacgaaacgctttacgaccatctgctcgcgcaggtcggcgag
cgtttttcggggctcgaggcgatggtcgccgaacagctcgtcgcgctgatcgacgaggcg
ggctatctgcgcgccgaccttcccgaactcgcgcagcggctgggggtgccgctcgcgctc
gtcgaggcggtgctcgcaggggttcaggcgttcgaccccgcgggcgtcggcgcgcgcgac
cttgccgaatgcatcgcgattcaggcgcgcgaggccgaccgctacgaccccgcgatgcaa
tgcatggtcgcgcacctcgacctcgtcgcgaagggcgcctttccgcaattgaagcgcatc
tgcggggtcgatgacgaggatctcgccgacatgatccgcgagctgcgcggctatgatccc
aagcccgggctgcgcttcggcggcggcgtcgcgcaagctgtggtccccgacctctacgtc
cgccgcaccgccgagggctggttggtcgaggtcaacagcggcaccctgccgcggctgctc
gtcaaccggcgctattacgacgagctggcgcagggcgcggcggcgaggaacaaggcgtgg
ttgtccgaacagctcgcgggcgccaactggctggtgcgcgcgctcgaccagcgccagcgc
acgatcgtcagggtcgcgagcgagatcgtcaaacagcaggaggggtttttcctccacggc
gtcgcgcatatgcgcccgctgaccttgcgtcaggtcgccgaggaaatcggtatgcacgaa
tcgaccgtcagccgcgtgacgagcaacaaatatctgtcgtgcgcgcgcggactgttcgag
ctcaaatatttcttttcgagcggcatttcggcgaccgccggcgacggcgcggtgtcggcc
gaggcggtgaagagccggatcagggcgctgatcgacgccgaggacccgaaggcgatcctg
tcggacgaggtgatcgcgcagaagctcgccgccgaaggccacgatatcgcgcggcgcacc
gtcgtcaaatatcgcgaggcgatgggctatggctcgtcggtgcaaaggcggcggcagaaa
gcgctggcgggataa
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