Sphingopyxis indica: KNJ79_19030
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Entry
KNJ79_19030 CDS
T09492
Name
(GenBank) ribonuclease E/G
KO
K08300
ribonuclease E [EC:
3.1.26.12
]
Organism
sina
Sphingopyxis indica
Pathway
sina03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
sina00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
KNJ79_19030
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
sina03019
]
KNJ79_19030
03009 Ribosome biogenesis [BR:
sina03009
]
KNJ79_19030
Enzymes [BR:
sina01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.26 Endoribonucleases producing 5'-phosphomonoesters
3.1.26.12 ribonuclease E
KNJ79_19030
Messenger RNA biogenesis [BR:
sina03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
KNJ79_19030
Ribosome biogenesis [BR:
sina03009
]
Prokaryotic type
rRNA processing factors
KNJ79_19030
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNase_E_G
RNase_E_G_Thio
S1
Anti-TRAP
Motif
Other DBs
NCBI-ProteinID:
WOF43187
LinkDB
All DBs
Position
complement(4027423..4030044)
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AA seq
873 aa
AA seq
DB search
MTTRMLIDARHREETRVAVTKGNRIEEFDFESAEHKQLKGNIYLAKVTRVEPSLQAAFVE
YGGNRHGFLAFSEIHPDYYQIPKEDREALLREEAEHAAEAAMRAEEDLDELEGDVAEVEG
HEDENGDAPTPVTVGEESDAEDEREDAEAGETEKDDAEEAKDDRGGRRGRGRGRGRKGRG
RARRDDDNGESRMSLRRRYKIQDVIRRRQVMLVQVVKEERGNKGAALTTYLSLAGRYCVL
MPNTMHGGGISRKISNGADRRKLKAIIDDLNLPPTMGCIVRTAGMSRTKTEIKRDFDYLA
RLWDEIREKTLGSSAPALIHSDSDLVKRAIRDIYHRDIEEVLVEGEDGYKAAKQFMKLLM
PSHARRVKQYADPVSLYQRYGVEDQLAGMLNPVVQLKSGGYLVINPTEALVSIDINSGRS
TREHNIEQTALSTNLEAAHEIARQLRLRDMAGLIVIDFIDMDHGSNVRKVERAMKEALKN
DRARIQIGRISGFGLMEMSRQRLRTGVLEASTRPCPHCEGTGLVRTASSAGLSALRLIEE
EAARGKGSKIILRASQEATFYLLNEKRRELREIEELYGVSVEILPDGETEGARMAIEVGG
PPPAQRRSFAPIELIEDDEDETVEEETDEDEEAERPVRDESDDGEGGGRKRRRRRRRGRR
GRRDEDGSEAGEAADADSSGESEEAAEEAPATVETEAEAPAEEKPKRRRGGRRKKSDEAE
AEAAPEAPAEAVAEAAAVEAEPAAEEKPKRKRAPRKTKAAAETAGAEAADAPVEAVAAND
AEPEAKPAPKKRANRKKAVAAEGPAAEAVEAEPEPEAKPAKAPARSRRRKAEPVAAESSP
TAEAPADAAPTDEAAVDETGEPRRGWWQRTFGN
NT seq
2622 nt
NT seq
+upstream
nt +downstream
nt
atgaccacgcgtatgttgatcgacgcgcggcaccgggaagaaacccgggtcgccgtcacc
aagggaaaccgcatcgaggagtttgacttcgagtccgccgagcacaagcagctcaagggc
aatatctatctggccaaggtcacccgcgtcgaaccgtcgctgcaggcggcgttcgtcgaa
tatggcggcaaccgtcacggcttcctggccttcagcgaaatccaccccgactattaccag
atcccgaaggaagaccgcgaagcgctgctccgcgaagaggccgagcatgccgccgaggcg
gcgatgcgcgccgaggaggatctcgacgagctcgaaggcgacgtcgccgaggtcgagggc
catgaggacgagaatggcgacgccccgacgccggtgacggtcggcgaggaaagcgacgcc
gaggacgagcgcgaagacgccgaagccggcgagaccgaaaaggatgacgccgaagaggcg
aaggacgaccgtggcgggcgccgcggacgcgggcgcggccggggccgcaagggccgcggg
cgcgcccgccgcgacgacgacaatggcgaaagccgcatgtcgctgcgccggcgctacaag
attcaggacgtcatccgccgccgccaggtgatgctggtccaggtcgtcaaggaagagcgc
ggcaacaagggcgcggcgctgacgacctatctcagcctcgccggccgttattgcgtgctg
atgccgaacacgatgcatggcggcgggatcagccgcaagatttcgaacggcgccgaccgc
cgcaagctgaaggcgatcatcgacgatttgaacctgccgccgacgatgggctgcatcgtc
cgcaccgcggggatgagccgcacgaagaccgagatcaagcgcgacttcgactatctcgcc
cgcctgtgggacgagattcgcgaaaagacgctggggtcgagcgcaccggcgctgatccat
tcggacagcgacctcgtcaagcgcgcgatccgcgacatctatcaccgcgacatcgaggaa
gtgctcgtcgagggcgaggacggctacaaggcggcgaagcagttcatgaagctgctgatg
ccgagccacgcgcggcgcgtgaagcaatatgccgaccccgtctcgctctatcagcgctac
ggcgtcgaggatcagctcgcggggatgctcaatcccgtcgtgcagttgaaatcgggcggc
tatctggtgatcaaccccaccgaggctttggtgtcgatcgacatcaactcgggccgctcg
acgcgcgagcataatatcgaacagaccgcgctcagcaccaatctcgaagccgcgcacgag
atcgcgcgccagctgcgcctgcgcgacatggccgggctgatcgtgatcgacttcatcgac
atggatcacggctcgaacgtccgcaaggtcgagcgcgcgatgaaggaggcgctgaagaac
gaccgcgcgcgcatccagatcggccgcatctcgggctttggcctgatggagatgagccgc
cagcgcctgcgcaccggcgtgctcgaagcctcgacgcgcccctgcccgcattgcgagggc
accgggctggtgcgtaccgcttcgtcggcgggcctcagcgcgctgcgcctgatcgaagag
gaagcagcgcgcggcaagggcagcaagatcatcctgcgcgcgagccaggaagcgaccttc
tacctgctcaacgaaaagcgccgcgagctgcgcgagatcgaggagctctacggcgtttcg
gtcgaaatcctgcccgacggcgagaccgagggtgcgcgcatggcaatcgaggtcggcggc
ccgcccccggcccagcgccgcagcttcgccccgatcgagctgatcgaggacgacgaggac
gagaccgtcgaagaggagacggacgaagacgaagaggccgagcgtccggtgcgcgacgaa
agcgacgatggcgagggcgggggccgcaagcgccgccgccgccgccgccgcggccgccgc
ggccgacgcgacgaggacggcagcgaagccggcgaagcggccgatgcagacagctccggc
gagagcgaagaggcggccgaggaggctccggcgaccgtagagaccgaagccgaagcgccg
gcggaggaaaagccgaagcgccgccgcggcggacgccgcaagaagagcgacgaggccgag
gccgaggcagcgccggaagcgcccgccgaagccgtcgccgaggcggcagccgtcgaggcc
gaacccgcagccgaggaaaagccgaagcgcaagcgcgcgccgcgcaagaccaaggcggcc
gccgaaacggccggggccgaagcggcggacgctcccgtcgaagcggtcgcggcgaatgat
gccgagcctgaggcgaagcccgcaccgaagaagcgcgcaaaccgcaagaaggctgtcgcg
gccgagggccccgctgccgaagcggtcgaagccgaacccgagcccgaagccaagcccgcc
aaggcgccggcgcgcagccgtcgccgcaaggccgaacccgtcgccgccgagtcatcgccg
accgcagaggctccggccgacgcggcgccgaccgacgaagccgctgtcgacgagacgggt
gaaccgcgccgcggctggtggcagcgcaccttcggcaattga
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