Sphingobium indicum B90A: SIDU_05110
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Entry
SIDU_05110 CDS
T04604
Name
(GenBank) DEAD/DEAH box helicase
KO
K11927
ATP-dependent RNA helicase RhlE [EC:
5.6.2.7
]
Organism
sinb
Sphingobium indicum B90A
Pathway
sinb03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
sinb00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
SIDU_05110
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
sinb03019
]
SIDU_05110
Enzymes [BR:
sinb01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
SIDU_05110
Messenger RNA biogenesis [BR:
sinb03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
SIDU_05110
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
Utp25_C
ERCC3_RAD25_C
DUF8086
Motif
Other DBs
NCBI-ProteinID:
APL93935
UniProt:
A0A1L5BM00
LinkDB
All DBs
Position
1076232..1077617
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AA seq
461 aa
AA seq
DB search
MQFTDLGLAEPILRALAAKKYGSPTPIQAQAIPVLLKGKDLCGIAQTGTGKTAAFALPSL
DHFARNPKPTPLQGCRMLVLSPTRELAAQIAQSFRDYGRFLKLSVEVVFGGVPINRQIRA
LGRGVDIVVATPGRLLDLIDQRAFTIKDTEIFVLDEADQMMDMGFIHPLKRIAKLLPKER
QNLFFSATMPGEIEALASQFLHDPVKVSVAPQSTTAERVRQQATFVNQMEKQALLNLTIQ
NEDIDRALIFTRTKHGADRVVRFLEGAGIQAVAIHGNKSQAQRTTALQAFRHGHVKLLVA
TDIAARGIDVSGVSHVINFELPNVPEQYVHRIGRTARAGAEGVAISFVADDERPYLKAIE
RTTKVKLDVVPLPENFVEAVRNLPKAAPQRKGREQTPEQKTRRAEGQRRYQDQQKQPRGN
AERAHRPDGEAANPARKNFRRRRGGSAVGAHKGAVQKTGGR
NT seq
1386 nt
NT seq
+upstream
nt +downstream
nt
atgcaatttaccgaccttggccttgccgagccgatcctgagggcgctcgccgccaagaaa
tatggttcgccaacgcccattcaggcgcaagccattcccgtgctgctcaagggcaaggat
ctgtgcggcatcgcgcagaccggcaccggcaagaccgccgccttcgcgctgccgagcctt
gaccatttcgcccgcaatcccaagccgacgccgcttcagggttgccgcatgctggtgctg
tcgccgacccgcgaactcgccgcgcagatcgcgcagagcttccgcgactatggccgcttc
ctgaagctgtcagtcgaggtcgtgtttggcggcgtgccgatcaaccggcagatcagggcg
ctgggacgcggggtagacatcgtcgtcgcgacgccgggtcgtctgctcgacctgatcgat
cagcgcgccttcaccatcaaggataccgaaatcttcgtcctcgacgaggccgaccagatg
atggacatgggcttcatccatccgttgaagcgcatcgccaagctgctgccgaaggaacgg
caaaacctgttcttctccgccacaatgccgggcgagatcgaggcgctagccagccagttc
ctgcacgatccggtgaaggtcagcgtcgcgccgcagtcgaccacggcggagcgggtgcgc
cagcaggcgaccttcgtcaaccagatggagaagcaggcgctgctcaacctgacgatccag
aacgaggatatcgaccgcgcgctgatcttcacccggaccaagcatggcgccgaccgggtc
gtgcgattcctggaaggggcggggattcaggccgtcgcgatccacggcaacaagagccag
gcgcagcggaccacggcgctccaggctttccgccacggccatgtgaagctgctggtggcg
accgacatcgcggcgcgggggatcgacgtttcgggcgtgtcccacgtcatcaatttcgaa
ctgcccaatgtgccggaacaatatgtccaccgcatcggccgcacggcgagggccggggcg
gagggcgtcgcgatcagcttcgtggcggacgacgagcggccttatctgaaggccatcgag
cggacgaccaaggtgaagctggacgtcgtgccgctgccggagaatttcgtggaggcggtg
cgcaaccttcccaaggccgcgccgcagcgcaagggccgggaacagacgccggaacagaag
acgcgacgcgccgagggccagcgccgctatcaggaccagcagaagcagccgcgcggcaat
gccgaacgggcgcatcggccggatggcgaggcggcgaaccctgccaggaagaattttcgc
cgccgccgcggcggcagcgctgtcggcgcgcacaagggcgcggtccagaagaccggcgga
cggtga
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