Sphingobium indicum B90A: SIDU_06280
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Entry
SIDU_06280 CDS
T04604
Name
(GenBank) RNA-binding protein hfq
KO
K03666
host factor-I protein
Organism
sinb
Sphingobium indicum B90A
Pathway
sinb02024
Quorum sensing
sinb03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
sinb00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
SIDU_06280
09140 Cellular Processes
09145 Cellular community - prokaryotes
02024 Quorum sensing
SIDU_06280
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
sinb03019
]
SIDU_06280
03036 Chromosome and associated proteins [BR:
sinb03036
]
SIDU_06280
Messenger RNA biogenesis [BR:
sinb03019
]
Prokaryotic type
Bacterial mRNA degradation factors
Other RNA degradation factors
Chaperones
SIDU_06280
Chromosome and associated proteins [BR:
sinb03036
]
Prokaryotic type
Nucleoid associated proteins
Other nucleoid associated proteins
SIDU_06280
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Hfq
Hfq_1
Motif
Other DBs
NCBI-ProteinID:
APL96265
UniProt:
A0A1L5BTT6
LinkDB
All DBs
Position
1325985..1326467
Genome browser
AA seq
160 aa
AA seq
DB search
MAEKVNNLQDIFLNSLRKSKTPVTMFLVKGVKLQGIITWFDNFSVLLRRDGQSQLVYKHA
ISTVMPAQSMDLTDLRKASDGNGKSKLLQEIFLSAVRKSGSPVTMFLVNGVMLQGEIAAF
DLFCMLLERDGMIQLVYKHAISTVQPLHALDLTGEGEGED
NT seq
483 nt
NT seq
+upstream
nt +downstream
nt
atggccgagaaagtgaacaaccttcaggacatattcctgaacagcctgcgcaagagcaag
acgccggtgaccatgttcctggtcaagggcgtgaaattgcagggcatcatcacctggttc
gacaatttctccgtcctgctgcggcgcgacgggcagtcgcaactggtgtacaagcatgcg
atttcgaccgtcatgcccgcccagtctatggaccttaccgacctgcgcaaggccagcgac
ggcaacggcaagtcgaagctgctccaggaaatcttcctgagcgcggtgcgcaagtcgggc
agcccggtgacgatgttcctggtgaacggcgtcatgttgcagggcgaaatcgccgccttc
gaccttttctgcatgctgctggagcgggacggcatgatccagctcgtctacaagcatgcc
atttccaccgtgcagccgctgcatgccctggacctgaccggcgagggcgagggggaggat
tga
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