Sphingobium indicum B90A: SIDU_06505
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Entry
SIDU_06505 CDS
T04604
Name
(GenBank) polyribonucleotide nucleotidyltransferase
KO
K00962
polyribonucleotide nucleotidyltransferase [EC:
2.7.7.8
]
Organism
sinb
Sphingobium indicum B90A
Pathway
sinb03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
sinb00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
SIDU_06505
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
sinb03019
]
SIDU_06505
03016 Transfer RNA biogenesis [BR:
sinb03016
]
SIDU_06505
Enzymes [BR:
sinb01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.8 polyribonucleotide nucleotidyltransferase
SIDU_06505
Messenger RNA biogenesis [BR:
sinb03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Other RNA degradosome components
SIDU_06505
Transfer RNA biogenesis [BR:
sinb03016
]
Prokaryotic type
tRNA degradation factors
SIDU_06505
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNase_PH
RNase_PH_C
S1
PNPase
KH_1
S1_RRP5
KH-I_KHDC4-BBP
S1_2
OB_RRP5_4th
BioW
Motif
Other DBs
NCBI-ProteinID:
APL94186
UniProt:
A0A1L5BMV7
LinkDB
All DBs
Position
complement(1377406..1379721)
Genome browser
AA seq
771 aa
AA seq
DB search
MFDVKKVSIELGGKTLTLETGRIARQADAAVLATYGETVVLCAVTAAKSVKEGQDFFPLT
VHYQEKYSAAGRIPGGFFKRERGATEKETLVSRLIDRPVRPLFPEGFYNEINVIAQVLSF
DGESEPDIVAMIAASAALTLSGVPFLGPIGAARVGYKDGEYQLNPSLDEVKTGELDLVVA
ATGNAVMMVESEAKELSEDVMLGAVLFAHEASKKVVNAIIDLAEKAAKDPWDVAKGDNLD
DLKKKLKKLIGKDIAAAYKLTDKSARSSAINAARDKAKAFFAEEGLDAQTVMAGIKLTKK
LEAEIVRTAILKEGKRIDGRTTTQIRPIEAMVGFLPRTHGSALFTRGETQAICTTTLGTK
DAEQMIDGLTGLHYESFMLHYNFPPYSVGEVGRFGAPGRREVGHGKLAWRALHPVLPSKE
EFPYTIRVLSDITESNGSSSMATVCGGSLSMMDAGVPLKRPVSGIAMGLILEGKEFAVIS
DILGDEDHLGDMDFKVAGTEAGITTMQMDIKVAGITQEIFEVALRQAKEGRAHILGEMSK
ALSSTRTELSAHAPRIETIQIDKSKIRDVIGTGGKVIREIVAETGAKVDIDDEGIIKISS
SDINQIEAAKKWILGIVEEAEVGKIYTGKVVNIVDFGAFVNFMGGKDGLVHVSEMKNERV
EKPTDVVSEGQEVKVKVLEIDPRGKVRLSMRVVDQETGEELEDTRPPREPRGDRGGDREG
GRGDRNRRDRGGDRGGRGGDRGPRRDRGPRAEGKGDDDGSSAGLPDFLTQD
NT seq
2316 nt
NT seq
+upstream
nt +downstream
nt
atgtttgatgtaaagaaggtatcaatcgagctgggcggcaagaccctcacgctcgaaacc
ggccgcattgcgcgtcaggccgacgccgccgtgctggcgacctatggcgaaaccgtggtg
ctgtgcgccgtgaccgccgccaagtcggtgaaggaaggacaggacttcttcccgctgacc
gtccattatcaggaaaaatattcggccgccggtcgcattccgggcggcttcttcaagcgc
gagcgcggcgcgacggaaaaggaaacgctggtttcccgcctgatcgaccgcccggttcgc
ccgctcttccccgaaggtttctataatgaaatcaacgtcattgcccaggttctgagcttc
gacggcgaaagcgagcccgacatcgtggcgatgatcgccgcttcggccgcgctgaccctg
tcgggcgtgcccttcctgggtccgatcggcgccgcccgcgtcggctacaaggatggcgaa
tatcagctcaacccctcgctggacgaagtgaagaccggcgagctcgacctggtcgtcgcc
gccaccggcaatgcggtgatgatggtcgaatccgaagccaaggagctttcggaagacgtc
atgctcggcgccgtcctcttcgcccatgaagcgtcgaagaaggtcgtcaacgcgatcatc
gacctcgccgaaaaggccgcgaaggatccgtgggacgtcgccaagggcgacaatctcgac
gacctcaagaagaagctcaagaagctgatcggcaaggacattgcggccgcctacaagctg
accgacaagtccgcccgttcgagcgcgatcaacgccgcccgcgacaaggccaaggccttt
ttcgcggaagagggcctggacgcccagaccgtcatggccggcatcaagctgaccaagaag
ctggaggcggagatcgtccgcaccgccatcctcaaggaaggcaagcgcatcgacggccgc
accaccacgcagatccgtccgatcgaggcgatggtaggcttcctgccgcgcacccatggt
tcggcgctgttcacccgcggcgaaacgcaggcgatctgcaccaccacgcttggcaccaag
gacgctgagcagatgatcgacggcctgaccggcctccactatgaaagcttcatgctgcac
tataacttcccgccctattcggtcggcgaagtgggtcgcttcggcgcgccgggccgtcgc
gaagtcggccatggcaagctcgcatggcgcgccctgcaccccgtgctgcccagcaaggag
gaattcccctacacgatccgtgtcctcagcgacatcaccgaatccaacggatcgtcctcg
atggcgacggtctgcggcggttcgctctcgatgatggatgccggcgttccgctgaagcgt
cccgtctccggcatcgccatgggcctgatcctggaaggcaaggagttcgcggtcatcagc
gacatcctgggcgatgaggatcacctcggcgacatggacttcaaggtggcgggcacggaa
gcgggcatcaccaccatgcagatggacatcaaggtcgccggcatcacgcaggaaatcttc
gaagtcgcgctgcgccaggcgaaggaaggccgcgcccacatcctgggtgagatgagcaag
gccctgtcctcgacccgcaccgaactgagcgcgcacgctccgcgcatcgagacgatccag
atcgacaagtcgaagatccgcgacgtcatcggcaccggcggcaaggtcatccgcgagatc
gtcgcggaaaccggcgcgaaggtcgacatcgacgacgagggcatcatcaagatcagctcg
tccgacatcaaccagatcgaagccgccaagaagtggatcctcggcatcgtcgaggaagcg
gaagtcggcaagatctacaccggcaaggtcgtcaacatcgtcgacttcggcgcgttcgtg
aacttcatgggcggcaaggacggcctcgtccacgtctccgaaatgaagaatgagcgcgtg
gaaaagccgaccgacgtcgtgtcggaaggccaggaagtgaaggtcaaggttctcgaaatc
gacccgcgcggcaaggttcgcctgtcgatgcgcgtggtcgaccaggaaaccggcgaggaa
ctggaagacacccgtccgccccgcgaacccagaggggatcggggcggcgaccgcgaaggc
ggccgtggcgaccgcaatcgccgcgaccgtggcggggaccgcggcggacgcgggggcgat
cgcggcccgcgccgcgaccgcggcccccgggccgaaggcaagggcgacgatgacggctcc
agcgccggcctgccggatttcctgacccaggattga
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