Sphingobium indicum B90A: SIDU_09160
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Entry
SIDU_09160 CDS
T04604
Name
(GenBank) DNA-directed RNA polymerase subunit beta'
KO
K03046
DNA-directed RNA polymerase subunit beta' [EC:
2.7.7.6
]
Organism
sinb
Sphingobium indicum B90A
Pathway
sinb03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
sinb00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
SIDU_09160
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
sinb03021
]
SIDU_09160
03400 DNA repair and recombination proteins [BR:
sinb03400
]
SIDU_09160
Enzymes [BR:
sinb01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
SIDU_09160
Transcription machinery [BR:
sinb03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
SIDU_09160
DNA repair and recombination proteins [BR:
sinb03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
SIDU_09160
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb1_1
RNA_pol_Rpb1_5
RNA_pol_Rpb1_2
RNA_pol_Rpb1_3
RNA_pol_Rpb1_4
RPOC_hybrid
Biotin_lipoyl_2
Vsr
Motif
Other DBs
NCBI-ProteinID:
APL94661
UniProt:
A0A1L5BP31
LinkDB
All DBs
Position
1903890..1908146
Genome browser
AA seq
1418 aa
AA seq
DB search
MNELTNFANPIQKPETFDQIQIGLASPERIRSWSFGEIKKPETINYRTFKPERDGLFCAR
IFGPIKDYECLCGKYKRMKYKGIVCEKCGVEVTVSKVRRERMGHIELAAPVAHIWFLKSL
PSRIGLLLDMQLKQLERVLYFESYIVTEPGLTPLEKYQLLTEDELLDAQDEYGEDAFSAG
IGAEAVKQMLMDLDLEGEKQVLLDELAVTKSELKPKKIIKRLKVVESFLESGNRPEWMIL
DVVPVIPPELRPLVPLDGGRFATSDLNDLYRRVINRNNRLKRLMELRAPDIIVRNEKRML
QEAVDALFDNGRRGRVITGANKRPLKSLSDMLKGKQGRFRQNLLGKRVDYSGRSVIVTGP
ELKLHQCGLPKKMALELFKPFIYARLDAKGLSMTLKQAKKWVEKERKEVWDILDEVIREH
PVMLNRAPTLHRLGIQAFEPVLIEGKAIQLHPLVCSAFNADFDGDQMAVHVPLSLEAQLE
ARVLMMSTNNILSPANGKPIIVPSQDMVLGIYYLSMEREGEPGEGMLLADMQEVHQALYA
KAVTLHSKIVSRVPQTDEAGNQYMKRFETTPGRMLLGECLPKSHKVPFDVVNRLLTKKEI
GDVIDQVYRHTGQKDTVLFADAIMALGFRHAFQAGISFGKDDMVIPDSKTAMVDETKALV
ADYEQQYQDGLITQQEKYNKVIDAWSRCGDQVANAMMDEIRAQPKDPQTGRMAPINSIYM
MAHSGARGSQAQMKQLAGMRGLMAKPSGEIIETPIISNFKEGLTVLEYFNSTHGARKGLA
DTALKTANSGYLTRRLVDVSQDCTIVEEDCGTDKALEMKAIVQGGSVIASLGERILGRTT
AQDIVDSKDGSVIVPIGTLLDEALVAQIEAIGTQSVKIRSPLICESKMGVCGKCYGRDLA
RGTPVNIGEAVGVIAAQSIGEPGTQLTMRTFHIGGAANFNETSNLEAMSDGTIELRDMPT
ITDKNGRRLSLARNGEIAIIDSEGRERETHRLPYGATILFADGDAVKKGERFAEWDPFTM
PVITEKPGIVKYQDLIDGKTLTEQTDEATGIAQRVVTEHRGSARTKEDLRPRLTLLDDQS
GEAARYMLAVGATLSVDDGAQVQAGDVLARVSREAAKTRDITGGLPRVAELFEARKPKDN
AIIAKVSGRVQFLKDYKAKRKIAINPEDGSEPVEYLIPKSKVIDVQEGDYVKRGDNLIGG
SPDPHDILEVLGIEPLAEYLVAEIQEVYRLQGVKINDKHIETIVRQMLQKVEITVSGDTT
LLVGEQVDREEMEEINAKLQPGFQPAEGKPVLLGITKASLQTRSFISAASFQETTRVLTE
AAVQGKKDTLVGLKENVIVGRLIPAGTGAGMNRMRVAASSRDAAMRAALRASSQVDLIAP
KTAAEEHAAELRQGPEAAIGDDPLAVVQGEDFTTEDME
NT seq
4257 nt
NT seq
+upstream
nt +downstream
nt
atgaacgaactgacgaacttcgccaatccgatccagaagccggaaaccttcgaccagatc
cagatcggccttgcctctccggagcgcatccgcagctggtccttcggcgagatcaagaag
ccggaaaccatcaactaccgcacgttcaagccggaacgtgacggcctgttctgcgcccgc
atcttcggtccgatcaaggactatgaatgcctgtgcggcaagtacaagcgcatgaagtac
aagggcatcgtctgcgaaaagtgcggtgtcgaagtcactgtgtcgaaggtccgccgcgag
cggatgggccatatcgaactggccgcgccggtcgcgcatatctggttcctgaagtcgctc
cccagccgcatcggcctgctgctcgacatgcagttgaagcagcttgagcgcgtcctctac
ttcgaaagctacatcgtcaccgagccgggcctgaccccgctggagaagtaccagcttctg
accgaggacgaactgctcgacgcgcaggacgaatatggcgaggacgccttctccgccggg
atcggcgcggaagcggtcaagcagatgctgatggacctcgacctggagggcgagaagcag
gtgctgctggacgagctggccgtcaccaagtcggaattgaagcccaagaagatcatcaag
cgcctcaaggtcgttgagagcttcctggaatcgggcaaccggcctgaatggatgatcctg
gacgtggttcctgtgatcccgccggaactgcgcccgctggtgccgctggacggcggccgc
ttcgcgacgtcggaccttaacgacctctaccgccgcgtcatcaaccgcaacaaccgtttg
aagcggctgatggaactgcgcgccccggacatcatcgtccgcaacgaaaagcgcatgttg
caggaggcggtcgacgccctgttcgacaatggccgccgcggccgcgtcatcaccggcgcg
aacaagcgtccgctgaagtcgctgtccgacatgctcaagggcaagcagggccgcttccgc
cagaacctgctcggcaagcgcgtcgactattcgggccgttcggtcatcgtgaccggcccg
gaattgaagctgcaccagtgcggcctgccgaagaagatggcgctcgaactgttcaagccc
ttcatctacgcccgcctcgacgccaagggtctttccatgaccctgaagcaggcgaagaag
tgggtcgagaaggagcgcaaggaagtctgggacatcctggacgaggtgatccgcgagcat
ccggtgatgctgaaccgcgcgccgacgctccaccgcctcggcattcaggcgttcgagccg
gtcctcattgaaggcaaggcgatccagcttcacccgctggtctgctcggccttcaacgcc
gacttcgacggcgaccagatggccgttcacgtgccgctttcgctggaagcgcagcttgaa
gcacgcgtgctgatgatgtcgaccaacaacatcctcagccccgcaaacggcaagccgatc
atcgttccgtcgcaggacatggttctgggcatctattatctgtcgatggagcgcgaaggc
gagccgggggaaggcatgctgctggccgacatgcaggaggtccatcaggcgctctatgcc
aaggccgttaccctgcactcgaagatcgtcagccgggtgccgcagaccgacgaagccggc
aatcagtatatgaagcggtttgaaaccacgccgggccgcatgctgctgggcgaatgcctg
cccaagagccacaaggtgcccttcgacgtcgtcaaccgccttctgaccaagaaggaaatc
ggcgacgtcatcgatcaggtctatcgccacaccggtcagaaggacacggtgctgttcgcc
gacgccatcatggccctgggcttccgccacgcgttccaggccggcatctcgttcggcaag
gacgacatggtgatcccggattcgaagaccgcgatggtcgacgaaaccaaggcgctggtg
gccgactatgagcagcaatatcaggacggcctgatcacccagcaggaaaagtacaacaag
gtgatcgacgcctggagccgttgcggcgaccaggtcgcgaacgccatgatggacgaaatc
cgcgcccagcccaaggatccgcagaccggccgcatggcgccgatcaactccatctacatg
atggcgcattccggcgctcgcggttcgcaggcgcagatgaagcagcttgccggcatgcgc
ggcctgatggccaagccttcgggcgagatcatcgaaacgccgatcatctcgaacttcaag
gaaggcctcaccgtccttgaatatttcaactccacccacggcgcccgcaagggcctggcc
gacaccgcgctcaagacggcgaactcgggttacctgacccgccgtctggtcgacgtcagc
caggattgcaccatcgtcgaagaggactgcggcaccgacaaggcgctggagatgaaggcc
atcgtccagggcggcagcgtcatcgcctcgctgggcgaacgaatcctgggccgcaccacg
gcgcaggacatcgtcgacagcaaggacggttcggtcatcgtgccgatcggcacgctgctc
gacgaagcgctcgtggcccagatcgaggccatcggcacgcagtcggtgaagatccgctcg
cctctcatctgcgaaagcaagatgggcgtctgcggcaagtgctacggccgcgacctcgct
cgcggcaccccggtcaatatcggcgaagcggtcggcgtcatcgcggcgcagtccatcggc
gagccgggcacgcagcttaccatgcgtaccttccacatcggcggcgcggcgaacttcaac
gaaacgtcgaacctggaagccatgtcggacggcacgatcgagctgcgcgacatgccgacc
atcaccgacaagaacggtcgccgcctcagcctcgcccgcaatggcgagatcgcgatcatc
gactccgagggccgtgagcgcgaaacgcaccgcctgccttacggcgccaccatcctgttc
gcggatggcgatgccgtgaagaagggcgagcgcttcgccgagtgggatcccttcaccatg
ccggtgatcacggaaaagccgggcatcgtgaaatatcaggatctgatcgacggcaagacg
ctgaccgagcagaccgacgaagccaccggcatcgcccagcgcgtggtgacggagcatcgc
ggttccgcccgcaccaaggaggatctgcgtccgcgcctcaccctgctcgacgaccagtcg
ggcgaagccgctcgctacatgctggcggtgggcgcgaccctgtcggtggacgacggcgcg
caggtgcaggccggtgacgtgctggcgcgcgtctctcgcgaagctgcgaagacccgcgac
atcaccggcggtctgccgcgcgtcgccgaactgttcgaagcccgcaagcccaaggacaat
gcgatcatcgccaaggtgtcgggccgcgtccagttcctcaaggattacaaggcgaagcgc
aagatcgccatcaatcccgaggatggtagcgagccggtcgaatacctcatccccaagagc
aaggtgatcgacgtccaggaaggcgactatgtgaagcgcggcgacaatctgatcggtggt
tcgcccgacccgcacgacattctggaggtgctgggcatcgagccgctggccgaatatctg
gttgccgaaatccaggaagtctatcgcttgcagggcgtgaagatcaacgacaagcacatc
gagacgatcgttcgccagatgctgcagaaggtcgagatcaccgtgtccggcgacaccacg
ctgctggtgggcgagcaggtcgaccgcgaggagatggaggagatcaacgcgaagctccag
cccggcttccagccggcggagggcaagccggtgctgctgggcatcaccaaggcgtcgctg
cagacccgcagcttcatctcggcggcgtccttccaggaaaccacccgcgtcctcacggaa
gcggcggtccagggcaagaaggacacgctggtgggcctgaaggaaaatgtcatcgtgggc
cgcctgattccggcgggcacgggcgcgggcatgaaccgcatgcgggtcgccgcctcgtcg
cgcgacgcggcgatgcgggccgcgctgcgcgcctccagccaggtcgacctgatcgcaccc
aagacggctgccgaagagcatgccgccgaactgcgccagggtccggaagccgccatcggc
gacgatccgctggccgtcgtccagggtgaggatttcaccactgaggacatggaataa
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