Sphingobium indicum B90A: SIDU_13295
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Entry
SIDU_13295 CDS
T04604
Name
(GenBank) excinuclease ABC subunit B
KO
K03702
excinuclease ABC subunit B
Organism
sinb
Sphingobium indicum B90A
Pathway
sinb03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
sinb00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
SIDU_13295
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
sinb03400
]
SIDU_13295
DNA repair and recombination proteins [BR:
sinb03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
GGR (global genome repair) factors
SIDU_13295
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
Supressor
SIDU_13295
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
UvrB_inter
UvrB_3rd
UvrB
Helicase_C
ResIII
UVR
DEAD
AAA_30
Kinesin
AAA_16
Microtub_bd
UB2H
SWI2_SNF2
DUF87
FATC
Peripla_BP_6
AAA_22
AAA_7
Motif
Other DBs
NCBI-ProteinID:
APL95411
UniProt:
A0A1L5BR91
LinkDB
All DBs
Position
2787339..2789522
Genome browser
AA seq
727 aa
AA seq
DB search
MSIQIRTTLDEPETGEGFVPHRPARPEKSEGGRPFKLVSDYEPSGDQPTAIAELVETALQ
GEKDQVLLGVTGSGKTFTMAKVIEALQRPALVLAPNKILAAQLYGEFRSFFPENAVEYFV
SYYDYYQPEAYVPRSDTYIEKESSVNEAIDRMRHSATRALLERDDVLIVASVSCLYGIGS
VETYSAMTFAMKKGQVEDQREIIRKLVALQYKRNDAAFARGNFRVKGDNLEIFPSHYEDT
AWRVSFFGNEIEDIVEFDPLTGKKVASLDYVKVFPNSHHVTPGPTLKQAMEAIRFELAER
LKELTAEGKLLEAQRLEQRTNFDLEMIAATGSCAGIENYSRFLTGRLPGEPPPTLFEYLP
ENALLFVDESHQTVPQIGAMARGDHRRKITLAEYGFRLPSCIDNRPLRFNEWDAMRPQTV
SVSATPGPWEMEQTGGAFSEQVIRPTGLIDPPVEIKPVEDQVDDLIHEAKETAKKGYRTL
VTTLTKRMAEDLTEFMHEAGIKVRYMHSDVETLERIELIRDLRLGVYDVLVGINLLREGL
DIPECGLVAILDADKEGFLRSETSLIQTIGRAARNVDGRVILYADRITGSMERALNETSR
RREKQMAYNLEHGITPTTIKRNIGDIIAHVASKDQVTVDTGLEDRPHLVGHNLRAYIEDL
EKKMRAAAADLEFEEAGRIRDEIRKLEAEELGLPAEQQVAAPRGRAMEGKPGTRKLRYGK
VQKKFGR
NT seq
2184 nt
NT seq
+upstream
nt +downstream
nt
atgtctatccagatccgcaccacgctggacgagccggagaccggcgaaggcttcgtcccc
caccgccccgcacgcccggaaaagagcgagggcggcaggccgttcaagctggtttccgac
tatgaaccgtcgggggaccagccgaccgccatcgccgaactggtggaaacggcgctccag
ggcgagaaggaccaggtgctgctgggcgtcaccggatcgggcaagaccttcaccatggcg
aaggtgatcgaggcgttgcagcggcccgcgctggtgctggcgcccaacaagatcctggcc
gcgcagctttacggggagttcaggagcttcttccccgaaaacgccgtcgaatatttcgtc
agctattacgactattatcagcccgaagcctatgtgccgcggtcggacacctatatcgaa
aaggagtccagcgtgaacgaggcgatcgaccggatgcgccattcggccacccgcgcgctg
ctggaacgcgacgatgtgctgatcgtggcctcggtttcctgcctctacggcatcggatcg
gtcgaaacctattcggcgatgaccttcgcgatgaagaagggccaggtggaggatcagcgg
gaaatcatccgcaagctggtggcgttgcagtacaagcgcaacgacgcggcctttgcgcgg
gggaatttccgggtgaagggggataatctggagattttcccgtcccactatgaggatacg
gcctggcgggtcagcttcttcggcaatgagatagaggacatcgtcgagttcgacccgctg
accggcaagaaggtggcgagcctcgactatgtgaaggtctttcccaattcgcaccacgtc
acgccggggccgacgctcaagcaggcgatggaggcgatccggttcgaactggccgagcgg
ctgaaggaactgaccgccgagggcaagctgctggaggcgcagcggctggagcagcggacc
aatttcgacctggagatgatcgcggcgaccggctcctgcgcggggatcgaaaattattcg
cgcttcctgaccggccgactgcccggcgagccgccgccgaccctgttcgaatatctgccc
gaaaacgcgctgctgttcgtcgacgagagccaccagaccgtgccgcagatcggggcgatg
gcgcggggcgaccaccggcgcaagatcacgctggccgaatatggattccgcctgccgagc
tgcatcgacaaccggccgctccgcttcaacgaatgggacgcgatgcggccgcagacggtc
agcgtctccgctacgcccggcccgtgggagatggagcagaccggcggcgccttctccgaa
caggtgatccgcccgaccgggcttatcgacccgccggtcgagatcaagccggtggaggat
caggtggacgacctgatccatgaggcgaaggagacggcgaagaagggctatcgcacgctg
gtgacgacgctcaccaagcggatggcggaggatctgaccgaattcatgcatgaggccggg
atcaaggtccgctacatgcacagcgatgtcgagacgctggagcggatcgagctgatccgc
gacctgcggctgggcgtctacgacgtgctggtgggcatcaacctgctgcgcgaggggctg
gacattcccgaatgcggactggtcgcgatcctggatgcggacaaggagggctttttgcgt
tccgaaacctcgctgatccagacgatcgggcgcgcggcgcgcaatgtcgacgggcgggtg
atcctctatgccgaccgtattaccgggtcgatggaacgggcgctcaacgaaacgtcgcgg
cggcgcgagaagcagatggcctataatctggagcatggcatcacgccgaccacgatcaag
cggaacatcggcgacatcatcgcccatgtcgcgtcgaaggatcaggtgacggtggatacg
gggctggaggaccggccgcacctcgtgggccacaatctgcgcgcctatatcgaggatctg
gaaaagaagatgcgcgccgccgcggccgatctggagttcgaggaagccgggcggatacgc
gacgagatccgcaagctggaggcggaggaactgggcttgcccgccgaacagcaggtggcg
gcgcccaggggccgggccatggaaggcaagccgggaacccgcaaattgcgctacgggaag
gtgcagaagaagtttggacgatag
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