Sphingobium indicum B90A: SIDU_13355
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Entry
SIDU_13355 CDS
T04604
Name
(GenBank) ribonuclease D
KO
K03684
ribonuclease D [EC:
3.1.13.5
]
Organism
sinb
Sphingobium indicum B90A
Brite
KEGG Orthology (KO) [BR:
sinb00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03016 Transfer RNA biogenesis [BR:
sinb03016
]
SIDU_13355
Enzymes [BR:
sinb01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.13 Exoribonucleases producing 5'-phosphomonoesters
3.1.13.5 ribonuclease D
SIDU_13355
Transfer RNA biogenesis [BR:
sinb03016
]
Prokaryotic type
3'processing and CCA adding factors
3'processing factors
SIDU_13355
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Gene cluster
GFIT
Motif
Pfam:
DNA_pol_A_exo1
HRDC
Motif
Other DBs
NCBI-ProteinID:
APL96375
UniProt:
A0A1L5BU32
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All DBs
Position
2802360..2803526
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AA seq
388 aa
AA seq
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MQIHPLITDSKTLAQFCARIAKSPYIAVDTEFMRENSYWPDLCLVQVADEHEAAAIDPKA
PGLDLSPLLDLMVDNEDVLKVFHAGGQDLEIIYNLTGKTPHPLFDTQIAAMALGLGEQIG
YGNLVDAWLGVQLDKGARFTDWARRPLDKRQIDYAIGDVTYLIQIFPKMLEELRRTGRGD
WLDQEMERISDPSNYENKPDEAWQRVRIASRKADVLGRLKALAAWREMEAQDKNLPRGRI
VKDETLADIASHPPRTQEDLGKVRGLSATWKTNDIGNRLMLALASHAPLAKEEMPERDPK
RPGLGKDGALVADLLKLLLKIRSRDINVAARLIARSDDIDALAAGVREDLAILEGWRYEQ
FGRDAVDLVEGRLAFAVKNGRLKMTRTQ
NT seq
1167 nt
NT seq
+upstream
nt +downstream
nt
atgcaaatccatccgctgattaccgacagcaagactctcgcccaattctgcgcccggatc
gccaagtcgccctatatcgcggtcgataccgaattcatgcgcgaaaacagctattggccc
gacctctgcctggtgcaggtcgcggacgagcatgaggcggccgccatcgatcccaaggcg
cccggcctcgacctgtcgcccctgctcgacctgatggtcgacaatgaggatgtgctgaag
gtctttcacgcgggcggccaggacctggagatcatctacaacctgaccggcaagacgccc
catccgctgttcgacacgcagatcgcggcgatggcgctggggctgggcgagcagatcggc
tacggcaatctggtcgacgcctggctgggcgtgcagctcgacaagggcgcgcgcttcacc
gactgggcgcgccgcccgctcgacaagcggcagatcgactatgcgatcggcgacgtcacc
tatctgatccagatattccccaagatgctggaggaactgcgccgcaccggccgcggcgac
tggctggaccaggagatggagcggatcagcgacccgtccaattacgagaacaagccggac
gaggcctggcagcgcgtccgcatcgccagccgcaaggccgatgtgctgggccgcctgaag
gcgctggcggcatggcgcgagatggaggcgcaggacaagaacctgccccgcggccgcatc
gtcaaggacgagacgctggccgacatcgccagccacccgccgcgcacgcaggaagacctg
ggcaaggtgcgcggcctgtccgccacctggaagaccaacgacatcggcaaccgcctgatg
ctggcgctggcaagccacgcgccgctcgccaaggaggaaatgccggagcgcgaccccaag
cgccccggcctgggcaaggacggcgcgctggtggcggacctgttgaagctgctgctgaaa
atccgttcccgcgacatcaacgtcgccgcgcgcctcatcgcccgcagcgacgacatcgac
gcgctggcggccggcgtgcgggaagacctcgccatcctggaaggctggcgctatgaacag
ttcggccgcgatgcggtcgacctggtggagggtcgcctggccttcgctgtcaagaacggc
cgcctcaagatgacccgcacgcaatag
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