Sphingobium indicum B90A: SIDU_13505
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Entry
SIDU_13505 CDS
T04604
Name
(GenBank) DNA polymerase I
KO
K02335
DNA polymerase I [EC:
2.7.7.7
]
Organism
sinb
Sphingobium indicum B90A
Pathway
sinb03030
DNA replication
sinb03410
Base excision repair
sinb03420
Nucleotide excision repair
sinb03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
sinb00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
SIDU_13505
03410 Base excision repair
SIDU_13505
03420 Nucleotide excision repair
SIDU_13505
03440 Homologous recombination
SIDU_13505
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
sinb03032
]
SIDU_13505
03400 DNA repair and recombination proteins [BR:
sinb03400
]
SIDU_13505
Enzymes [BR:
sinb01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.7 DNA-directed DNA polymerase
SIDU_13505
DNA replication proteins [BR:
sinb03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
Other elongation factors
SIDU_13505
DNA repair and recombination proteins [BR:
sinb03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA polymerase I
SIDU_13505
NER (nucleotide excision repair)
GGR (global genome repair) factors
SIDU_13505
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_pol_A
5_3_exonuc_N
5_3_exonuc
DNA_pol_A_exo1
DprA_N
Ribosomal_60s
HHH_5
HHH
Motif
Other DBs
NCBI-ProteinID:
APL95448
UniProt:
A0A1L5BRK2
LinkDB
All DBs
Position
2829651..2832437
Genome browser
AA seq
928 aa
AA seq
DB search
MAQNHLYLVDGSGYIFRAYHQLPPLTNRHGQPVGAVYGYTTMLWKLADELGKAEGPTHLA
VVLDKGSHTFRNDMYDAYKANRPPPPEDLVPQFPMIRDATRAFSLPCIEEAGFEADDIIA
SYTKAAVAQGWHVTIVSSDKDLMQLIQPGVDMYDTMKNERRGADYVMTKFGVRPEQLGDV
LALMGDSVDNVPGVPGIGPKTAAKLITEYGGLEAALEAAPHMKKSKMQENLIEHADMARL
SRRLVALHDGMDLPEPLDDLTLKGIPLEPLQAFLEHHGFKSLLARAGAPAAAVAVATAAA
AVTEATAPSAPVLEEEPPIDRSLYETVVTEEALDRWIAAAHAEGLVAVDTETDMLDCVSC
ALVGVSLAVGPNAACYIPVGHGGKDMFAEKPDQLPLPLVLAKLKPLLEDDSVLKIGQNLK
YDITVLRRHGIEIAPYDDTIVMSFDLDAGQSLAGHGMDEAARVHLNHVCISFKDVCGTGK
SQISFAEVPLDKATEYAAEDADVTLRLWRLFKSRIANEGATRVYELVDRPLVGVIAKMEH
EGIKVDREALSRLSAEFTAGIAALEEEIHALAGQPFAIGSTQQLGAILFDKMGYKGGRKG
KSGAYSTDVTILEQLKAQGAEIAGKVLDWRQLSKLKSTYTDALQAQINKDSGRVHTSYSL
SGAQTGRLSSTDPNLQNIPIRTEVGRQIRHAFVAEPGNVILAADYSQIELRLAAHMADVP
ALKEAFANGEDIHAATAQQLFGEVNRDTRGRAKTINFAILYGISRWGLAGRLEISADEAQ
DMISRYYERFPGISLYITDTIEKARSRGYTETLFGRKTWFPRIKAPVQHERQGAERAAIN
APIQGTSADIIKRAMARMGPALAAEGLHQVEMLLQVHDELVFELPEGDVEHAGAVIRRVM
EGAAEPIVKLSVPLGVEIGHGSSWGAAH
NT seq
2787 nt
NT seq
+upstream
nt +downstream
nt
atggcccagaatcatctctatctcgtcgacggcagcggctatatcttccgcgcctatcac
cagcttccgccgctcaccaacaggcatgggcagccggtcggcgcggtctatggctatacc
accatgctctggaagctggccgacgaactgggcaaggcggaaggcccgacccatctggcg
gtggtgctggacaagggcagccacaccttccgcaacgacatgtacgacgcctacaaggcg
aaccgcccgccgccgccagaggatctggtcccgcagttcccgatgatccgcgacgcaacc
cgcgctttctccctcccctgcatcgaggaagcggggttcgaagcggacgacatcatcgcc
agctataccaaggccgccgtcgcgcagggctggcacgtcaccatcgtcagttccgacaag
gatctgatgcagctgatccagcccggcgtcgacatgtacgacacgatgaagaatgagcgg
cgcggcgcggattatgtgatgaccaagttcggcgtccggcccgaacaattgggcgacgtg
ctggcgctgatgggggacagcgtcgacaatgtccccggcgtccccggcatcggtcccaag
accgccgccaagctgatcaccgaatatggcgggctggaagcggcgctggaagccgcgccg
cacatgaagaagtcgaagatgcaggaaaacctgatcgaacatgccgacatggcccgcctg
tcgcgcaggctggtggcgctgcatgacggcatggacctgcccgaaccgctggacgacctg
accctgaagggcattccgctggagccattgcaggccttccttgagcatcatgggttcaag
tcgctgctcgcccgcgccggcgcgcccgccgccgccgtggcggtcgcgaccgcggcggcc
gccgtcaccgaagccaccgccccctccgccccggtgctggaggaagaaccgccgatcgac
cgcagcctctacgaaaccgtggtgacggaggaggcgctggaccgctggattgccgccgcc
catgccgaagggctggtcgccgtcgatacggagaccgacatgctggactgcgtgtcctgc
gcgctggtcggggtgagcctggccgtcgggccgaacgccgcctgctacatacccgtcggc
catggcggcaaggacatgttcgcggaaaagcccgaccagcttcccctcccgctggtcctc
gcgaaactcaagccgctgctggaggacgacagcgtcctcaagatcggccagaatctgaaa
tatgacatcacggtcctgcgccgccacgggatagagatcgccccctatgacgacaccatc
gtcatgagcttcgacctcgacgccgggcagagcctggcgggccacggcatggacgaggcg
gccagggtccacctcaaccatgtctgcatcagcttcaaggatgtgtgcggcaccggcaag
agccagatcagcttcgccgaagtcccgctcgacaaggcgaccgaatatgccgccgaggat
gcggacgtcacgctgcgcctgtggaggctgttcaagagccgcatcgccaatgagggcgcg
acccgcgtctacgaactggtcgaccggccgctcgtcggcgtgatcgcgaagatggagcat
gagggcatcaaggtcgaccgcgaggcgctctcccgcctctccgccgagttcaccgccgga
atcgcggcgctggaggaggaaatccacgcgctggccggccagcccttcgccatcggatcg
acgcagcaactgggcgcgatcctgttcgacaaaatgggttacaagggcggcaggaagggc
aagtccggcgcctattcgaccgacgtcaccatattggagcaattgaaggcccagggcgcg
gagatcgcgggcaaggtgctggactggcggcagctttccaagctcaaatcgacctatacc
gacgcgctccaggcccagatcaacaaggatagcggccgggtccataccagctacagcctg
tccggcgcgcagaccggccgcctgtcgtcgaccgaccccaatctccagaacatcccgatc
cgcaccgaagtgggccgccagatccgccacgccttcgtcgcggagccgggcaatgtcatc
ctggcggcggactatagccagatcgaactgcgcctggccgcgcacatggcggacgtgccc
gcgttgaaggaggcgttcgccaatggcgaggacattcacgccgccaccgcccagcaattg
ttcggggaggtcaaccgcgacacgcgaggccgggccaagacgatcaatttcgcgatcctc
tacggcatcagccgctggggcctggccggtcggctggagatcagcgccgacgaagcgcag
gacatgatcagccgctattatgagcgtttccccggcatcagcctctacatcaccgacacc
atcgaaaaggcgcgttcaaggggctatacggagacgctgttcgggcggaagacatggttc
ccgcgcatcaaggcgccggtccagcacgaacgccagggcgcggagcgcgccgcgatcaac
gccccgatccagggcaccagcgccgacatcatcaagcgcgccatggcccgcatgggaccg
gcgctggcggccgaagggctgcaccaggtcgagatgctgctgcaggtgcatgacgaactg
gtcttcgaactgccggagggcgatgtggagcatgccggcgcggtgatccggcgcgtcatg
gagggcgcggcggagccgatcgtgaagctgagcgtgccgctgggggtagagatcggccat
ggttcgagttggggggcggcgcattag
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