Sphingobium indicum B90A: SIDU_15580
Help
Entry
SIDU_15580 CDS
T04604
Name
(GenBank) transcription termination factor Rho
KO
K03628
transcription termination factor Rho
Organism
sinb
Sphingobium indicum B90A
Pathway
sinb03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
sinb00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
SIDU_15580
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
sinb03021
]
SIDU_15580
03019 Messenger RNA biogenesis [BR:
sinb03019
]
SIDU_15580
Transcription machinery [BR:
sinb03021
]
Prokaryotic type
Bacterial type
Other transcription-related factors
Transcription termination factor
SIDU_15580
Messenger RNA biogenesis [BR:
sinb03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Other RNA degradosome components
SIDU_15580
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Rho_RNA_bind
ATP-synt_ab
Rho_N
OB_RNB
ATPase_2
S1CSD-TOTE-2
AAA_22
Spore_III_AA
NACHT
AAA
AAA_25
AAA_14
GpA_ATPase
Motif
Other DBs
NCBI-ProteinID:
APL95813
UniProt:
A0A1L5BSF3
LinkDB
All DBs
Position
3272362..3273618
Genome browser
AA seq
418 aa
AA seq
DB search
MHLKDLKKKAPAELVTMAEELGVEGASTLRKQDLMFAILKVEADNGEQIMGEGTIEVLPD
GFGFLRSPEANFLAGPDDIYVSPNQVRKFGLRTGDTVEGEIRAPKDGERYFALTKLISVN
FDDPEVVRHRVNFDNLTPLYPTQKLTLDATDPTVKDKSARVIDIVSPQGKGQRALIVAPP
RTGKTVLLQNIAKAITDNHPEVFLIVLLIDERPEEVTDMQRSVKGEVVSSTFDEPAQRHV
QVAEMVIEKAKRLVEHKKDVVILLDSITRLGRAYNTVVPSSGKVLTGGVDANALQRPKRF
FGAARNIEEGGSLSIIATALIDTGSRMDEVIFEEFKGTGNSEIVLDRKVADKRIFPALDV
GKSGTRKEELLVDKAKLSKMWVLRRILMQMGTVDAMEFLLDKMKDSKTNEDFFDSMNQ
NT seq
1257 nt
NT seq
+upstream
nt +downstream
nt
atgcaccttaaggatctcaagaaaaaagcgcccgccgaactcgtgaccatggcggaggaa
ctgggcgtcgagggcgcatcgaccctgcgcaagcaggatctgatgttcgcgatcctcaag
gtcgaggccgacaatggcgagcagatcatgggcgagggcacgatagaggtgctgcccgac
ggcttcggcttcctgcgttcgcccgaagcgaatttcctcgccggtcccgacgacatctat
gtctcgcccaaccaggtgcgcaaattcggcctgcgcaccggcgacacggtggagggcgaa
atccgcgcccccaaggatggggagcgctatttcgccctgaccaagctcatttccgtcaat
ttcgacgatcccgaagtcgtccgtcaccgcgtcaatttcgacaatctgacgccgctctat
ccgacgcagaagctgacgctcgacgcgaccgacccgaccgtcaaggacaagtcggcccgc
gtcatcgacatcgtctcgccgcagggcaagggccagcgcgcgctgatcgtcgcgccgccg
cgcaccggcaagaccgtgctgctccagaacatcgccaaggcgatcaccgacaaccatccc
gaagtcttcctgatcgtcctgctgatcgacgagcgtccggaagaagtcaccgacatgcag
cgcagcgtgaagggcgaggtcgtttcctccaccttcgacgaaccggcgcagcgccacgtc
caggtcgccgaaatggtgatcgaaaaggccaagcgcctcgtggaacacaagaaggacgtg
gtgatcctgctcgactcgatcacccgcctcggccgcgcctacaacacggtggtgccgtcg
tcgggcaaggtgctgaccggcggcgtcgacgccaacgcgctccagcggcccaagcgcttc
ttcggcgcggcccgcaacatagaggagggcggctcgctctccatcatcgccaccgcgctg
atcgacacgggcagtcgcatggacgaggtcatcttcgaagagttcaagggcaccggcaac
tcggaaatcgtcctcgaccgcaaggtggcggacaagcgcatcttcccggcgctggacgtc
ggcaagtcgggcacccgcaaggaagaattgctggtcgacaaggcgaagctcagcaagatg
tgggtgctgcgccgcatcctgatgcagatgggcacggtcgacgccatggaattcctgctc
gacaagatgaaggattccaagaccaacgaggatttcttcgactcgatgaaccagtaa
DBGET
integrated database retrieval system
