Stenotrophomonas indicatrix: DAIF1_00800
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Entry
DAIF1_00800 CDS
T07128
Name
(GenBank) eukaryotic DNA topoisomerase I, catalytic core
KO
K03168
DNA topoisomerase I [EC:
5.6.2.1
]
Organism
sinc
Stenotrophomonas indicatrix
Brite
KEGG Orthology (KO) [BR:
sinc00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
sinc03032
]
DAIF1_00800
03400 DNA repair and recombination proteins [BR:
sinc03400
]
DAIF1_00800
Enzymes [BR:
sinc01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.1 DNA topoisomerase
DAIF1_00800
DNA replication proteins [BR:
sinc03032
]
Prokaryotic type
DNA Topoisomerases
DAIF1_00800
DNA repair and recombination proteins [BR:
sinc03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHIIR (short-homology-independent illegitimate recombination)
Facilitator
DAIF1_00800
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Topoisom_I
Top1B_N_bact
DUF7508
Motif
Other DBs
NCBI-ProteinID:
QBR42565
LinkDB
All DBs
Position
100893..101954
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AA seq
353 aa
AA seq
DB search
MPATPTPERQAARAAGLRYVDDTQPGFSRVRAGKGFSYRDADGHAVRDAATLQRIRALAI
PPAYTAVWICARADGHLQATGRDARGRKQYRYHADWAAVRDAGKFDRTIAFGQALPALRR
RLGRDLKRSGFPREKVLAVVVALLADTLVRVGNETYAQENKSYGLTTLRNRHLDLLRGGR
VRMRFRGKSGQLQEVVVGDRRLGALVRSVQQLPGQALFQYRDDAGEVQPVDSGAVNDYLR
EVMGEDFTAKDFRTWGGTMAAVQAFAATELPEPASQRALAKAQREVVCQVAARLGNTPAV
CRKAYIDPCVFAGWERGELTALAGLRGPRQWEQATLKVLRRARRLSRKAGQPQ
NT seq
1062 nt
NT seq
+upstream
nt +downstream
nt
atgccagcgacccccacacccgaacgccaggccgcgcgcgccgccggcctgcgctacgtc
gatgacacccagcccggtttcagccgcgtccgcgccggcaagggtttttcctatcgcgat
gccgatggtcatgccgtgcgcgatgccgccaccctgcagcgcatccgcgcgctggccatt
ccaccggcctataccgccgtgtggatctgtgcccgcgccgatggccacctgcaggccacc
ggccgcgacgcgcgtgggcgcaagcagtaccgctaccacgccgactgggcggccgttcgc
gacgccggcaagttcgaccgcaccatcgccttcggccaggcgttgccggcgctgcggcgg
cgcctgggccgcgacctcaagcgcagcggtttcccgcgcgagaaggtgctggcggttgtg
gtcgcgctgctggccgacacgctggtgcgggtgggcaatgaaacctatgcgcaggagaac
aagtcatacggcctgacaacgttgcgcaaccgtcacttggacctgcttcggggtggccgg
gtgcgcatgcggttccgcggcaagtccgggcagttgcaggaggtggtggtcggtgaccgt
cggctgggcgcgctggtgcgcagcgtgcagcagctgccgggtcaggccctgttccagtac
cgcgacgacgcgggcgaggtgcagccggtggattcgggcgcggtgaacgactacctgcgc
gaggtgatgggcgaggacttcaccgccaaggacttccgcacctggggcggcacgatggcg
gcggtgcaggccttcgccgccaccgagctgcccgagccggccagccaacgcgcgctggcc
aaggcgcaacgcgaggtggtgtgccaggtggctgcgcgcttgggcaatacgccagcggta
tgccgcaaggcctacatcgatccctgcgtgttcgccggttgggaacgcggcgaactgacc
gcactggcgggcctgcgcggcccgcggcagtgggagcaggcgacactgaaggtgctgcgc
cgggcccggcggctcagccgcaaggcaggtcagccgcagtag
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