Stenotrophomonas indicatrix: DAIF1_05420
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Entry
DAIF1_05420 CDS
T07128
Name
(GenBank) hypothetical protein
KO
K21929
uracil-DNA glycosylase [EC:
3.2.2.27
]
Organism
sinc
Stenotrophomonas indicatrix
Pathway
sinc03410
Base excision repair
Brite
KEGG Orthology (KO) [BR:
sinc00001
]
09120 Genetic Information Processing
09124 Replication and repair
03410 Base excision repair
DAIF1_05420
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
sinc03400
]
DAIF1_05420
Enzymes [BR:
sinc01000
]
3. Hydrolases
3.2 Glycosylases
3.2.2 Hydrolysing N-glycosyl compounds
3.2.2.27 uracil-DNA glycosylase
DAIF1_05420
DNA repair and recombination proteins [BR:
sinc03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA glycosylases
DAIF1_05420
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DUF4130
UDG
DUF2026
Motif
Other DBs
NCBI-ProteinID:
QBR43015
LinkDB
All DBs
Position
complement(595583..597082)
Genome browser
AA seq
499 aa
AA seq
DB search
MPRPLPELQRWSLRVDPPWSLDAWRGAAREALLRGVLPEQLDWITGTEASLLDAPAVQQA
PLPDGATVPNVPRDFVELAATCLCHRDPQRLPLLYRLLWRIAHGERTVLSNPADADVLRL
MALAQAVRRDTHKMKAFVRFREVPGETDAFIAWFEPDHNIVDRVAPFFARRFAGMRWAIL
TPARSVRWDGSALSFGDGGSRRDAPAEDARETLWQTYYASIFNPARLNTRMMQQEMPARY
WKHLPEAHLLPGLVREAAGRVQEMHDRPAQAPQRRIPARPNDATGAGADNGSLQALRQQA
AVCRQCPLWEASTQTVFGEGRADARIMLVGEQPGDVEDLSGRPFAGPAGKLLDRALQELG
IERSALYLTNAVKHFHHERRGKVRLHKRPESRHVHACRPWLQGEIARVKPQVIVCLGATA
ASSVFGRDFNLTRDRGRWLTLEDGTRGYATVHPAWVLRQKDDTRREDAYRLFRDDLRQLL
AADSAPTGHGPALPRAGDR
NT seq
1500 nt
NT seq
+upstream
nt +downstream
nt
atgccgcgcccgctgcctgagctgcagcgctggtcgctgcgcgtagacccgccgtggtcg
ctggatgcctggcgcggtgcggcgcgtgaggccttgctgcgcggcgtgctgccggaacag
ctggactggatcacaggtaccgaagcgtcgctgctggacgcgccggcggtgcagcaggcg
ccactgcccgacggcgccaccgtcccgaacgtgccgcgcgacttcgtcgaactggccgct
acctgcctgtgccatcgcgatccgcagcgcctgccgctgctgtaccgcctgctgtggcgc
atcgcgcatggcgaacgcacggtgctgtccaatccggccgacgccgatgtgctgcggttg
atggcgctggcgcaggcggtgcgccgcgacacgcacaagatgaaggccttcgtgcgcttc
cgggaggtgcccggcgagaccgacgcgttcatcgcctggttcgagcccgatcacaacatc
gtcgaccgggtcgcgccgtttttcgcccgccgttttgccggcatgcgctgggcgatcctg
acccccgcgcgcagtgtccgctgggatggcagcgcgctctcgttcggtgatggcggcagc
cgtcgcgatgcacccgccgaagacgcccgggagacgctgtggcagacctattacgccagc
atcttcaatccggcccggctcaacacgcggatgatgcagcaggaaatgcccgcccgttac
tggaagcatcttcccgaagcgcacctgttgccgggtcttgtgcgcgaggcagccggccgc
gtgcaggagatgcatgatcgaccggcacaggcaccgcagcgacgtattcccgcacggccg
aacgatgcaaccggtgccggtgcggacaatggcagcctgcaggcgttgcgccagcaggct
gccgtctgtcggcagtgcccgctgtgggaagcgtcgacccagaccgtgttcggtgaaggt
cgtgccgatgcacgcatcatgctggtgggcgaacagcccggtgatgtcgaggacctgagt
ggtcgccccttcgccgggccggcgggcaagctgctggaccgtgcgctgcaggagctgggc
atcgaacgcagcgccctgtacctgaccaacgcggtgaagcacttccatcacgagcggcga
ggcaaggtgcgcctgcataagcgccctgagagccgccatgtgcatgcctgccggccgtgg
ctgcagggcgagatcgcacgggtgaagccacaggtgatcgtctgtctcggcgccacggcg
gcctcgtccgtattcggtcgcgatttcaacctgacgcgcgaccgtggccgctggctcacg
ctcgaggatggcacccggggatacgccaccgtgcatcctgcctgggtactgcggcagaag
gatgatacgcggcgcgaggacgcctaccggttgttccgcgatgacctgcggcaactgctg
gcggccgattccgcgcccaccgggcatggcccggcgctaccgcgcgccggagaccggtag
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