Stenotrophomonas indicatrix: DAIF1_10860
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Entry
DAIF1_10860 CDS
T07128
Symbol
recB_1
Name
(GenBank) RecBCD enzyme subunit RecB
KO
K03657
ATP-dependent DNA helicase UvrD/PcrA [EC:
5.6.2.4
]
Organism
sinc
Stenotrophomonas indicatrix
Pathway
sinc03420
Nucleotide excision repair
sinc03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
sinc00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
DAIF1_10860 (recB_1)
03430 Mismatch repair
DAIF1_10860 (recB_1)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
sinc03400
]
DAIF1_10860 (recB_1)
Enzymes [BR:
sinc01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
DAIF1_10860 (recB_1)
DNA repair and recombination proteins [BR:
sinc03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
GGR (global genome repair) factors
DAIF1_10860 (recB_1)
MMR (mismatch excision repair)
Other MMR factors
DAIF1_10860 (recB_1)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
UvrD-helicase
AAA_19
UvrD_C_2
UvrD_C
Motif
Other DBs
NCBI-ProteinID:
QBR43541
LinkDB
All DBs
Position
1199752..1201725
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AA seq
657 aa
AA seq
DB search
MSALAVPGNNERDDGVVEEICGYLTEEPPRNYFLFAGAGSGKTRTLVEVLRRMTGVVEHE
KGGRLARRLQIYGRSIRVVTYTKNAVAVIKGRLGDNDLVDVSTIHAFCWELISGFNDDIR
EALVAIKQAQLEKETAEAIGKPRGITAAKQRDLDEIKVDIEAFRLTDVFIYNPDRETHGA
GALAHKHVLDATAWLLQHKSTLQTILKDRHPIILIDESQDTMKGILDALMSLTEPRSLGL
TLGLLGDHRQRIYTDGHSDLPSLVPVSWATPELQMNHRSQRRIVTLINRIWEAEIDGRTQ
PANGVEQHPRTEKAGGLVRLFIGDTSLSPEEKVASERWCADQMRQASGSDAWSQGHYQLL
ALEHKLVATRGAFLDAYSAMFLIDPNSAAPTGSGENKGPTAVQVLLNELAQLEACVGPDG
AIDELKATEVLRCFGRLGNMPEQAAERARRSDEMLQAISAFATACQNPGATVEQVLTPIL
VAHLFEVDHRLLDAFADKSPAPPAPARGEEESKKDRIRRGWCALFDTPWSQLQKYRSYLA
GNSVLATHQVVKGSEFPHVLVVMDDKLAGGNQISYDKIFGGAQLSKSDWDNVGKGKETTI
DRTLRLLYVTCSRAKDSLALVLWSSAPSVALNRVTASDWFSEGEFLAIPWPITKPHS
NT seq
1974 nt
NT seq
+upstream
nt +downstream
nt
atgagcgcgctcgccgtccctggcaacaacgagcgtgatgatggggttgtcgaggaaatc
tgcggctatctcactgaggagccgcctcgcaactacttcctctttgccggtgcggggtcc
ggaaagacgcgcacattggtcgaggtgctgcgtcgaatgaccggcgttgtggagcacgaa
aaaggggggcggctcgctcgacgactgcagatctatggccgctcgatacgcgtggtcaca
tacacaaagaacgccgtcgcggtcatcaaagggcgccttggagacaacgacttggtggat
gtctccacaatccacgcgttctgttgggaactcattagcggattcaacgacgacatccga
gaagccctcgtcgccatcaagcaagctcagctcgaaaaggaaactgcagaggcgattggc
aagcctagggggatcactgcagcgaagcagcgggacttggatgagataaaggtagacatc
gaggcatttcggctgacagatgtgttcatctacaacccggaccgcgagacgcatggtgcc
ggcgcgctcgcccacaaacacgtgctggacgcgacggcgtggctgctgcagcacaaatct
acgctgcaaaccattttgaaagaccgccaccccatcatacttatcgatgagtcgcaagac
acaatgaagggtatcttggacgccttgatgagcttgacggagccaaggagtttaggcctc
accctaggactgcttggcgaccatcggcagcgcatatacacggatggtcactcggacctt
ccgagcctagttccagtgagctgggcgacgccagagctgcaaatgaatcatcgcagtcaa
cgtcgaatcgtcacgctcatcaacagaatatgggaggcagagatcgatggcagaacgcag
cctgccaacggcgtcgagcagcatccgcgaactgagaaggccggcggattggtccgactc
tttatcggcgacacatcgctctcgccggaggaaaaggttgcaagcgaacgctggtgcgca
gatcagatgcggcaagccagcggttctgatgcctggagccaaggtcactatcagctgctc
gctctagagcacaagctcgtcgcaactcgcggcgcgttcctcgacgcatacagtgcaatg
tttctgatcgacccgaattcggccgcgcctacgggcagcggtgagaacaaggggcccact
gctgtgcaggtgcttttgaatgagctcgcgcagttggaggcctgtgttggccccgatggt
gccatagacgagctcaaggctaccgaagtccttcgctgcttcggtcgtctcgggaatatg
ccagaacaggcggccgagcgcgctaggcgttccgacgagatgcttcaagccatttccgcc
tttgctactgcctgtcagaatcctggcgccactgttgaacaagttctcactccgatactg
gtcgcgcacctgttcgaggtcgatcatcgacttctagatgcctttgccgacaagtctcct
gctccacctgctccggccaggggtgaggaggagtccaagaaggaccgcatacgtcggggg
tggtgtgcgctgttcgacactccttggagtcagttgcagaagtatcgctcctacctcgcc
ggaaattcggtgcttgccacccaccaagttgtcaaaggctcagagttccctcatgttttg
gttgtgatggacgataagctggctggcggcaatcaaatttcatacgacaagatttttgga
ggcgcccagctcagtaaatcggactgggataatgttggcaaaggaaaagaaacaaccatc
gatcgtaccttacgcctcctgtatgtcacctgcagtcgtgctaaggactcattggctctc
gtgctatggtcctctgccccttcagttgcgctgaacagagtcacggcgagcgattggttc
tcggaaggtgagtttttagcgattccgtggcccatcacaaagccgcattcgtga
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