Stenotrophomonas indicatrix: DAIF1_13340
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Entry
DAIF1_13340 CDS
T07128
Symbol
dnaE
Name
(GenBank) DNA polymerase III subunit alpha
KO
K02337
DNA polymerase III subunit alpha [EC:
2.7.7.7
]
Organism
sinc
Stenotrophomonas indicatrix
Pathway
sinc03030
DNA replication
sinc03430
Mismatch repair
sinc03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
sinc00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
DAIF1_13340 (dnaE)
03430 Mismatch repair
DAIF1_13340 (dnaE)
03440 Homologous recombination
DAIF1_13340 (dnaE)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
sinc03032
]
DAIF1_13340 (dnaE)
03400 DNA repair and recombination proteins [BR:
sinc03400
]
DAIF1_13340 (dnaE)
Enzymes [BR:
sinc01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.7 DNA-directed DNA polymerase
DAIF1_13340 (dnaE)
DNA replication proteins [BR:
sinc03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
DNA polymerase III holoenzyme
DAIF1_13340 (dnaE)
DNA repair and recombination proteins [BR:
sinc03400
]
Prokaryotic type
SSBR (single strand breaks repair)
MMR (mismatch excision repair)
DNA polymerase III holoenzyme
DAIF1_13340 (dnaE)
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
DNA_pol3_alpha
DNA_pol3_finger
PHP
HHH_6
tRNA_anti-codon
tRNA_anti_2
Motif
Other DBs
NCBI-ProteinID:
QBR43788
LinkDB
All DBs
Position
complement(1484132..1487710)
Genome browser
AA seq
1192 aa
AA seq
DB search
MSNSRFVHLHVHTEFSLADSTIRVPAKPDQADPKKAKQANLLSRSVELGLPALAVTDLNN
LFALVKFYKAAEGVGIKPIAGADVMIAEEGQDPWRMTLLCRDREGYLSLSRLLTRAWMEG
HRPEGGVAVHPDWLKAGNANLFALAGRDSLAGRLALDGKHDLAEQQLADWQRVFGDGLHL
ELTRTGRDGEESFNQFALMAAGQRGLPVIASNDVRFLSPSDFSAHEARVCISTGRVLDDP
KRPREYSDQQYLKSAEEMCALFADIPDAIDNTLALAERCNIEMRLGTYFLPDYPVPDEET
LDSWIRSESRKGLAARLEKNPIAPGMTAQDYSDRLEFELDTIIKMGFPGYFLIVADFIQW
GKAQGIPIGPGRGSGAGSLVAWALQITDLDPLPYNLLFERFLNPERVSMPDFDIDFCMDR
RDEVIDYVARKYGRERVSQIITYGTMAAKAVVRDSGRVLGFPYGLVDGVAKLIPNILGIS
LKDAMGEGKDSEMASPELIQRYQSEDDVRDLIDLARQLEDLTRNAGKHAGGVVIAPEPLS
EFCPLFAEHDEDGRGKNPVTQFDKNDVEEVGLVKFDFLGLRTLTIIDWAVKAINKRHERA
GIPPVDITQLPLDDAPTYKDIFASGNTGAVFQFESSGMRRLLKDAKPDRFEDLIALVSLY
RPGPMDLIPSFVDRKHGREDVEYPDPRTERILRDTYGIMVYQEQVMQMAQIVGGYSLGGA
DLLRRAMGKKVPAEMAKHREIFREGAAKDGVGEAKADAIFDLMEKFAGYGFNKSHAAAYA
LVSYQTAWLKRHYPAEFMAATLSSDMDNTEKVVGFLDEVRNLGLTVLPPKVNQSAFMFEA
STPDTIQYGLGAIKGVGQGACEAVVDERLRGGDYTDLLDFCTRIGSAKLNRRTLEAMINC
GALDELGHNRASLMLQLPEVIKATEQMARERASGQNSLFGGPEPGVQAIHLELQETDEWP
LLQRLNGERDTLGFYLSGHPFDPWRDDVRDLVGTDLGSVEKIWSANSNSGGGEKRWRPEV
QTVLAGQVVGVRRKGESQIFIQLEDGRGRVECSAFSDAMAEFGHLMTKDRILVVKGGLRE
DEFNGGFALRIRQCWDFDEVCANYATRLSLRLDLRHQRPVWERIDALLDRHRPGRTPLRL
DLLLKGPDGGIAGMLDVSGQSAVRVDSKLMEALRAEPAVRTLKVRYSPPWAS
NT seq
3579 nt
NT seq
+upstream
nt +downstream
nt
atgtccaactcccgcttcgtacatctccacgtccacaccgagttctcgctggcggactcc
accatccgcgtgccggccaagccggaccaggctgacccgaagaaggccaagcaggccaac
ctgctgtcgcgctcggtcgaactcggcctgcctgcgctggcggtgaccgacctcaacaac
ctgttcgccctggtcaagttctacaaggccgccgaaggcgtgggcatcaagcccatcgcc
ggcgccgacgtgatgatcgccgaagaaggccaggacccgtggcggatgaccctgctgtgc
cgcgaccgcgagggctacctgagcctgtcgcgtctgctgacccgggcatggatggaaggc
catcgccccgagggcggcgtggcggtgcatccggactggctgaaggccggcaacgccaac
ctgttcgccctggccggccgtgacagtctggccgggcgcctggcgctggatggcaagcac
gatctggccgagcagcagctggccgactggcagcgcgtgttcggcgacggcctgcacctg
gagctgacccgcaccggccgcgatggcgaagagagcttcaaccagttcgcgctgatggcc
gccggccagcgtggcctgccggtgatcgccagcaacgacgtacgcttcctgtcgccgtcc
gatttcagcgcgcacgaagcccgcgtgtgcatctccaccggccgcgtactggatgacccc
aagcgcccgcgcgagtacagcgaccagcagtacctgaagtcggccgaagagatgtgcgcg
ctgttcgccgacatccccgatgcgatcgacaacacgctggcgctggccgagcgctgcaac
atcgagatgcgtctgggcacctacttcctgcccgactatccggtgcccgacgaggagacg
ctggacagctggatccgcagcgagtcgcgcaagggcctggccgcacgcctggaaaagaat
cccatcgcgcccggcatgaccgcgcaggattacagcgaccgcctcgagttcgagctggac
accatcatcaagatgggcttccccggctacttcctgatcgtggccgacttcatccagtgg
ggcaaggcgcagggcattccgatcggcccgggccgtggttcgggtgcgggttcgctggtg
gcgtgggcactgcagatcaccgatctggacccgctgccgtacaacctgctgttcgagcgc
ttcctcaaccccgaacgcgtgtcgatgcccgacttcgacatcgacttctgcatggaccgc
cgcgacgaagtcatcgactacgttgcgcgcaagtatggccgcgagcgggtcagccagatc
atcacctatggcaccatggcggccaaggcggtggtgcgcgactccggccgcgtgctcggc
ttcccctacggcctggtcgacggtgtcgccaagctgatcccgaacatcctcggcatctcg
ctgaaggatgcgatgggtgagggcaaggacagcgagatggcttcgcccgagctgatccag
cggtaccagagcgaggacgacgtccgcgacctgatcgacctggcgcggcagctggaagac
ctgacccgcaacgccggcaagcacgccggtggcgtggtgatcgcgcccgagccgttgagc
gagttctgcccgctgtttgccgaacacgatgaagacggccgcggcaagaatccggtcacc
cagttcgacaagaacgacgttgaagaagtcggcctggtgaagttcgacttcctcggcctg
cgcacgctgacgatcatcgactgggcggtgaaggcgatcaacaagcgccatgagcgcgcc
ggcattccgccggtggacatcacccagctgccgctggacgatgcgcccacctacaaggac
atcttcgcctcgggcaataccggcgcggtgttccagttcgaatcctcgggcatgcgccgc
ctgctgaaggacgccaagcccgaccgtttcgaagacctgatcgcgctggtgtcgctgtac
cgacccggcccgatggacctgattccctccttcgtcgaccgcaagcacgggcgcgaagac
gtggagtatcccgatccgcgcaccgagcgcatcctgcgcgacacctacggcatcatggtg
taccaggagcaggtgatgcagatggcgcagatcgtcggcggctactcgctgggcggcgcc
gacctgctgcgccgtgcgatgggcaagaaggtgccggcggaaatggccaagcaccgcgag
atcttccgcgaaggtgcggccaaggacggcgtcggcgaagccaaggccgatgcgatcttc
gacttgatggagaagttcgccggctacggcttcaacaagtcgcacgccgccgcctacgcg
ctggtgagttaccagacggcctggctcaagcgccattacccggccgagttcatggccgcg
acgctgtcttcggacatggacaacaccgaaaaggtggtcggcttcctggacgaggtgcgc
aacctcggcctgaccgtgctgccgccgaaggtgaaccagtccgccttcatgtttgaagcg
tctacgccggacacgatccagtacggcctgggggcgatcaagggcgtcggccagggtgcc
tgcgaagcggtggtggacgaacgccttcgcggcggcgactacaccgatctgctcgatttc
tgcacccgcatcggttcggccaagctcaaccggcgcacgctggaagcaatgatcaactgc
ggtgcgctggatgagttgggccacaaccgtgcctcgctgatgctgcagctgccggaagtg
atcaaggccaccgaacagatggcgcgcgagcgtgcgtccggccagaattcgctgttcggc
ggccccgagccgggcgtacaggccatccacctggagctgcaggaaaccgacgaatggccg
ttgctgcagcgcctcaacggcgagcgcgacacgctgggcttctacctcagcggccacccg
ttcgacccgtggcgcgatgacgtgcgcgatctggtcggtaccgacctcggctcggtggaa
aagatctggagcgccaacagcaacagtggtggcggcgagaagcgctggcgtccggaagta
cagaccgtgcttgccggccaggtggtcggcgtgcgccgcaagggcgagagccagatcttc
atccaattggaagatggccgtggccgcgtcgaatgcagcgcgttctccgatgccatggcc
gagttcggccacctgatgaccaaggaccgtatcctggtggtcaagggcggcctgcgcgaa
gacgaattcaatggcggcttcgcactgcgcatccgccagtgctgggacttcgacgaggtc
tgtgcgaactacgccacgcgcctgtcgctgcggctggacctgcgccatcagcgaccggtg
tgggagcgcatcgacgccctgctcgaccgccatcgccccggccgcacgcccctgcgcctg
gacctgctgctgaagggccccgatggcggcatcgccggcatgctcgatgtttccgggcag
agcgcggtgcgcgtcgattccaagctgatggaggcgctgcgcgccgaaccggccgtgcgc
acgctgaaggtgcgctacagcccgccatgggccagctga
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integrated database retrieval system
