Stenotrophomonas indicatrix: DAIF1_19890
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Entry
DAIF1_19890 CDS
T07128
Symbol
recJ
Name
(GenBank) single-stranded-DNA-specific exonuclease RecJ
KO
K07462
single-stranded-DNA-specific exonuclease [EC:3.1.-.-]
Organism
sinc
Stenotrophomonas indicatrix
Pathway
sinc03410
Base excision repair
sinc03430
Mismatch repair
sinc03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
sinc00001
]
09120 Genetic Information Processing
09124 Replication and repair
03410 Base excision repair
DAIF1_19890 (recJ)
03430 Mismatch repair
DAIF1_19890 (recJ)
03440 Homologous recombination
DAIF1_19890 (recJ)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
sinc03400
]
DAIF1_19890 (recJ)
DNA repair and recombination proteins [BR:
sinc03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
RecJ
DAIF1_19890 (recJ)
DSBR (double strand breaks repair)
HR (homologous recombination)
RecFOR pathway proteins
DAIF1_19890 (recJ)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
DAIF1_19890 (recJ)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DHH
RecJ_OB
DHHA1
Motif
Other DBs
NCBI-ProteinID:
QBR44424
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Position
2163078..2164835
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AA seq
585 aa
AA seq
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MSLAADAVLPSSDTPMIRRRDAVVPGSWPEGTLPLLARLYAARGAHTPELALPKLGNLHA
PELLTGIDAAVDLLVQAIAADKRILVVGDFDCDGATACAVGVRGLRMLGAQHVFHAVPNR
MVHGYGLSPSLVDELAALQPDLLVTVDHGIACHAGVTAAKARGWQVLVTDHHLPGPLLPP
ADVIVDPNLDGDAFPSKALAGVGVIFYVLMALRRQMREAGVFADGKGPDLTTLLDLVAVG
TVADLVVLDANNRALVSAGLRRLRNGQGCVGLKALIEASGRGAARLTATDIGFGLGPRLN
AAGRLEDMALGIALLLTEDPRQARDIAQTLEQINAERRAVQQSMTDDAEHALSQVVLDTA
GQRPVAACLFDADWHPGVVGLVASKMKDRLHRPVIAFAPAEPGADTLRGSARSIAGLHIR
DALALVDARHPGLIERFGGHAMAAGLSMRLDHLAAFEAAFVATVLEMLDPAALQQQVLSD
GELAADELDHRHADALRLAGPWGQGFPEPLFDGHFEVANWRVLKERHLKLELRLPGVPGT
INAIHFGGWHGNAPGRHVHLAYRLACDDYRGGAAIQLIVEHCLPA
NT seq
1758 nt
NT seq
+upstream
nt +downstream
nt
atgtcccttgccgccgatgctgtgctgccgtcttccgatacgccgatgatccgccgtcgc
gatgcggtcgtgcccggtagctggccggagggcacgctgcccctgctggcccgcctgtat
gccgcacgtggtgcgcacacgccggagctggccctgcccaagctcggcaacctgcatgcg
ccggaactgctgaccggcatcgacgcggcggtggacctgctggtgcaagccatcgccgcc
gacaagcgcattctggtagtcggtgatttcgactgcgacggcgccaccgcctgcgcggtc
ggtgtgcgtgggctgcgcatgctcggcgcgcaacatgtcttccacgcagtgcccaaccgc
atggtgcacggctatggtctgtcgccgtcactggtggacgagctggctgcgctgcagccg
gatctgctggtcaccgtcgaccacggcattgcctgccatgccggcgtgaccgcggccaag
gcgcgtggctggcaggtgctggtgaccgatcaccatctgcccggtccactgctgccaccg
gccgatgtcatcgtcgaccccaacctcgacggcgacgccttccccagcaaggcgctggcc
ggtgtcggcgtgatcttctacgtactgatggcgctgcgccggcagatgcgcgaagcgggg
gtatttgccgacggcaaagggccggacttgaccacgctgctggacctggtggcggtgggc
acagtggccgacctggtggtgctcgatgccaacaatcgcgccctggtcagcgcgggattg
cgccggctgcgcaatggccagggctgcgtcggcctgaaggcattgatcgaggccagcggc
cgcggtgccgcacgcctgaccgccaccgacatcggcttcgggcttggcccgcgcttgaac
gcggccggtcggctggaagacatggcattgggtattgccctgctgctcaccgaagatccg
cggcaagcccgcgacatcgcgcagacgctggaacagatcaacgccgagcggcgtgcggtt
cagcagtcgatgaccgatgacgccgaacacgcgctgtcgcaggtggtgctcgataccgca
gggcagcgcccggtggcggcctgcctgttcgatgctgattggcaccccggcgtggttggc
ctggttgcttcaaagatgaaggatcgcctacatcggccggtgatcgcgttcgcgccggcc
gagccgggcgccgacaccctgcgcggctcggcgcgttcgatcgccggcctgcatatccgt
gatgcgctggcgctggtcgatgcacgccatcccggcttgatcgagcgcttcggcggtcac
gcgatggccgccgggttgagcatgcgcctggatcatctggctgccttcgaagccgcgttc
gtcgccaccgtgctggaaatgctcgacccggctgcactgcagcagcaggtgctcagcgac
ggcgaactggccgcggacgaactcgatcatcgccatgccgatgcgctgcgtttggcgggg
ccatgggggcagggctttcccgagccgctgttcgatggccacttcgaagtggccaactgg
cgcgtgctgaaggaacggcatctgaagctggaactgcgcctgcccggcgtacccggcacg
atcaacgcgatccatttcggcggctggcacggcaatgcgcccggtcgccacgtgcatctc
gcctaccggctcgcctgcgatgactatcgtggcggcgccgccatccagctgatcgtcgag
cactgcctgccggcgtag
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