Stenotrophomonas indicatrix: DAIF1_27930
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Entry
DAIF1_27930 CDS
T07128
Name
(GenBank) RNA pseudouridylate synthase
KO
K06178
23S rRNA pseudouridine2605 synthase [EC:
5.4.99.22
]
Organism
sinc
Stenotrophomonas indicatrix
Brite
KEGG Orthology (KO) [BR:
sinc00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03009 Ribosome biogenesis [BR:
sinc03009
]
DAIF1_27930
Enzymes [BR:
sinc01000
]
5. Isomerases
5.4 Intramolecular transferases
5.4.99 Transferring other groups
5.4.99.22 23S rRNA pseudouridine2605 synthase
DAIF1_27930
Ribosome biogenesis [BR:
sinc03009
]
Prokaryotic type
rRNA modification factors
23S rRNA modification factors
DAIF1_27930
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
PseudoU_synth_2
S4
S4_2
Motif
Other DBs
NCBI-ProteinID:
QBR45219
LinkDB
All DBs
Position
3059171..3060901
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AA seq
576 aa
AA seq
DB search
MSDTPRKPSLNKLSLKREATSEQFKLEERLHKVLAQAGLGSRRALEQRIAEGLVKVNGEV
AQTGMSVKSGDRIELDGRGFVATALAEPSRVLVYNKPEGEVTTREDPEGRPTVFESLPAL
KGARWIAVGRLDINTTGLLLATTDGELANAMMHPSFEVEREYVVRVRAPEGEDKVPDAVV
DRLTRGVALEDGPAKFDEIERIGGTDSHDWFRVVVKEGRNREVRRLWESQGCQVSRLKRT
RYGKVSLPRELARGQSVELPGSQVEALRAELKLEEGAPSALTLQPVIGQRRAAKTTVRVR
EGGRGNAYVNGHNTADEGRELRRFDNVREDRGRGRGGKGGGGFKGGLTVSGEAAAKQSQR
PFKQRAPKNDRSLPEGNPAAFRTWYVPDGVSTGPSGHRNAGPGARGPGARGPGAGAGGQG
RPYGKPKGPGAGAGGGQGRGGYGGEGRGGYGGEGRGGAGGAGGQGRPAGAGNRSQGQGNK
HPYGHPGNAPSFPSDHANPGFSPYGSSRPAGNGRPGGNANARPGGNRGPGAPGGNRGPGG
PGGNRGPGGPGGNRGPGGPGGNRGPGGPRRSGPRGG
NT seq
1731 nt
NT seq
+upstream
nt +downstream
nt
atgagtgacaccccccgcaagccctcgttgaacaagctttcgctcaagcgcgaagccacg
tccgaacagttcaagctggaagaacgcctgcacaaggtcctggcccaggccggcctcggc
tcgcgtcgtgcgctggaacagcgcattgccgaaggcctggtcaaggtcaacggtgaagtc
gcccagaccggcatgtcggtcaagagcggcgacaggatcgaactcgacggccgcggcttc
gtcgccactgcgctggccgagccgtcgcgcgtgctggtctacaacaagccggaaggcgaa
gtgaccacgcgtgaagaccctgaaggtcgcccgaccgtgttcgaatccctgccggcgctg
aagggtgcccgctggatcgccgtcggccgcctggacatcaacaccaccggcctgctgctg
gcgaccaccgacggtgagctggccaacgccatgatgcacccctccttcgaggtcgaacgc
gagtacgtggtgcgcgtgcgtgccccggaaggcgaggacaaggtgcccgatgccgtcgtc
gaccgcctcacccgtggtgtcgcgctggaagatggcccggccaagttcgatgagatcgaa
cgcatcggcggcaccgattcgcacgactggttccgcgtcgtggtgaaggaaggccgcaac
cgcgaagtgcgccgcctgtgggaatcgcagggctgccaggtcagccgcctcaagcgcacc
cgctacggcaaggtcagcctgccgcgcgaactggcccgcggccagtccgtcgaactgccg
ggcagccaggtcgaagcgctgcgcgccgaactgaagctggaagaaggcgcgccgtcggcc
ctgaccctgcagccggtgatcggccagcgtcgtgccgccaagaccaccgtgcgcgtacgc
gaaggtggccgcggcaacgcttacgtcaatggtcacaacaccgccgatgaaggtcgcgaa
ctgcgtcgcttcgacaacgtgcgagaagaccgcggccgcggtcgcggcggcaagggtggc
ggcggtttcaagggcggcctgaccgtcagcggtgaagctgctgccaagcagtcgcagcgc
ccgttcaagcagcgcgcgccgaagaacgaccgctcgctgccggaaggcaacccggccgca
ttccgtacctggtacgtgccggatggcgtgagcaccggcccgagcgggcatcgcaatgcc
ggtccgggcgcacgtggcccgggtgcccgtggtccgggcgcaggtgcaggcggccagggc
cgtccgtacggcaagccgaagggcccaggcgcaggcgccggtggcggccagggtcgtggc
ggctacggtggtgaaggtcgtggcggctacggtggtgaaggacgcggtggcgccggtggc
gcgggcggccagggtcgtccggccggtgcgggcaaccgctcgcagggccagggcaacaag
cacccgtacggccatccgggcaatgccccgagcttcccgtccgaccacgccaatcccggc
ttcagtccgtatggcagctcgcgtccggccggcaacggtcgtccgggcggcaatgcgaat
gcacgtccgggcggcaaccgtggtccgggtgctccgggcggcaatcgcggcccgggtggc
cccggcggcaaccgtggtcccggcggcccgggtggcaaccgcggcccgggtggccccggc
ggcaaccgtggcccgggtggcccgcgtcgcagcggcccgcgcggcggctga
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