Stenotrophomonas indicatrix: DAIF1_28650
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Entry
DAIF1_28650 CDS
T07128
Symbol
rnd
Name
(GenBank) ribonuclease D
KO
K03684
ribonuclease D [EC:
3.1.13.5
]
Organism
sinc
Stenotrophomonas indicatrix
Brite
KEGG Orthology (KO) [BR:
sinc00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03016 Transfer RNA biogenesis [BR:
sinc03016
]
DAIF1_28650 (rnd)
Enzymes [BR:
sinc01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.13 Exoribonucleases producing 5'-phosphomonoesters
3.1.13.5 ribonuclease D
DAIF1_28650 (rnd)
Transfer RNA biogenesis [BR:
sinc03016
]
Prokaryotic type
3'processing and CCA adding factors
3'processing factors
DAIF1_28650 (rnd)
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_pol_A_exo1
RNAseD_HRDC_C
HRDC
DNA_polI_exo1
Motif
Other DBs
NCBI-ProteinID:
QBR45289
LinkDB
All DBs
Position
3136887..3137966
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AA seq
359 aa
AA seq
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MATWITTPAELDTYRQQRPTRIGLDTEFIRERTFWPQLALVQMAVGEDILLIDPLIPGMP
EALAPWLADESITKVMHSASEDLVAFKWTCGVLPRPLFDTQIGAALAGIGAGMGYQKLVQ
EITGVALEKGETRSDWMRRPLSDSQLKYAADDVEHLFAMHDAISAKLETLGRQQWLHDDG
ERLLASVANDEDRWPHLGMRSAQFLDAPAQRRLLRLLRWRDVQARASDRPRSWILDNELA
ATLARTPPADAAAVSKLFEQFPKAPRKLAAAVWQALDTPLADEADAPLAMQASDASKQLL
KKLQDAVAERSRELGLADGVLASRKHLESYLEHQQWPAALAGWRQQELEPVLAPLLPAA
NT seq
1080 nt
NT seq
+upstream
nt +downstream
nt
gtggcaacctggatcaccacccccgccgagctggacacataccgccagcagcggccgacc
cgcatcggcctggataccgaattcatccgtgaacgcaccttctggccacagctggcgctg
gtgcagatggccgtcggcgaggacatcctgctgatcgacccgttgattcccggcatgccc
gaggccttggcgccgtggctggccgatgaatccatcaccaaggtgatgcatagcgccagc
gaagacctggtggcgttcaagtggacctgtggcgtgctgccgcgtccgttgttcgacacc
cagattggcgccgcgctggctggcatcggtgctggcatgggctaccagaagctggtgcag
gagatcaccggcgtggcactggaaaagggcgaaacccgctctgactggatgcgcaggccg
ttgtcggactcccagctgaagtacgccgccgacgacgtcgagcatctgttcgcgatgcac
gacgccatctccgccaagctggaaacgctggggcgccagcagtggctgcacgacgatggc
gagcgcctgctggccagcgtggcaaatgacgaagaccgctggccccacctgggcatgcgc
tcggcgcagttcctggacgcgcccgcgcagcgccgcctgctgcgcctgctgcgttggcgc
gacgtgcaggcgcgcgccagcgaccgcccgcgcagctggatcctggacaacgaactggcc
gccaccctggcacgcaccccgccagccgatgccgctgcagtgagcaagctgttcgaacag
ttcccgaaggcgccgcgcaagctggccgctgcggtatggcaggcgctggacacgccgctg
gccgacgaagccgatgcgccgttggcgatgcaggccagcgatgccagcaagcagctgctg
aagaagctgcaggatgcggtggccgaacgcagccgcgagctcggcctggccgacggcgtg
ctggcctcacgcaagcatctggaaagctatctggagcatcagcagtggccggctgcactg
gccggctggcgccagcaggaactggagccggtgctggcaccgctgttgcccgctgcttga
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