Stenotrophomonas indicatrix: DAIF1_29190
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Entry
DAIF1_29190 CDS
T07128
Symbol
pnp
Name
(GenBank) polyribonucleotide nucleotidyltransferase
KO
K00962
polyribonucleotide nucleotidyltransferase [EC:
2.7.7.8
]
Organism
sinc
Stenotrophomonas indicatrix
Pathway
sinc03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
sinc00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
DAIF1_29190 (pnp)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
sinc03019
]
DAIF1_29190 (pnp)
03016 Transfer RNA biogenesis [BR:
sinc03016
]
DAIF1_29190 (pnp)
Enzymes [BR:
sinc01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.8 polyribonucleotide nucleotidyltransferase
DAIF1_29190 (pnp)
Messenger RNA biogenesis [BR:
sinc03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Other RNA degradosome components
DAIF1_29190 (pnp)
Transfer RNA biogenesis [BR:
sinc03016
]
Prokaryotic type
tRNA degradation factors
DAIF1_29190 (pnp)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNase_PH
RNase_PH_C
S1
PNPase
KH_1
KH_2
KhpA-B_KH
Phage_tube
KH_5
S1_2
Motif
Other DBs
NCBI-ProteinID:
QBR45339
LinkDB
All DBs
Position
complement(3181855..3183963)
Genome browser
AA seq
702 aa
AA seq
DB search
MAKITKTFQYGKHTVTLETGEIARQAGGAVIVKFDDTVLLVSAVAAKSAREGQDFFPLTC
DYQEKFYAGGRIPGGFFKREGRATEKETLISRLIDRPIRPLFPEDYKNEVQIIATVMSLN
PDIDGDIPALIGASAALSLAGTPFKGPIAAAKVGYKNGEYILNPTVTELKDSELELVVAG
TANAVLMVESEAALLSEDVMLGAVTFGHREMQKVINAINELTVEAGTKPSTWVAPAKNDV
LISALQEAIGPRLGEAFQVRDKLQRRDAISAIKKDVVESLAGRVAAEGWNPAELSKEFGE
LEYSTMRNSVLDTKVRIDGRALDTVRPIAVKTGILPRTHGSSLFTRGETQAIVTITLGTA
RDGQVIDAVSGEYKENFLFHYNFPPYSVGETGRMMGPKRREIGHGRLAKRGVLAVMPSLE
SFPYTIRVVSEITESNGSSSMASVCGSSLALMDAGVPVKAPVAGIAMGLVKEGDRFVVLS
DILGDEDHLGDMDFKVAGTAEGISALQMDIKIEGITEEIMKQALQQAKAGRLHILGEMAH
GLTAPREELSDYAPRLLTIKIHPDKIREVIGKGGSTIQAITKETGTQIDIQDDGTIVIAS
VNAIAAQAAKARIEQITSDVEPGRIYEGKVAKIMDFGAFVTILPGKDGLVHVSQISSDRV
EKVGDVLKEGDVVKVKVLEVDKQGRIRLSMKAVEEGEGATAE
NT seq
2109 nt
NT seq
+upstream
nt +downstream
nt
gtggcaaaaatcaccaaaaccttccagtacggcaagcacaccgtcacgcttgagaccggc
gaaatcgcccgccaggccggtggcgccgtcatcgtcaagttcgacgacaccgtgctgctg
gtctccgccgttgccgccaagagcgcgcgtgagggccaggacttcttccccctgacctgt
gactaccaggagaagttctacgccggtggccgtatcccgggtggcttcttcaagcgcgaa
ggccgcgcgaccgagaaggaaaccctgatctcgcgtctgatcgatcgtccgatccgtccg
ctgttcccggaagactacaagaacgaagtccagatcatcgccaccgtgatgtcgctgaac
ccggacatcgacggtgacatcccggccctgatcggtgcctcggctgcgctgtcgctggcc
ggcaccccgttcaagggtccgatcgccgccgccaaggtgggttacaagaacggtgagtac
atcctcaacccgaccgtgaccgaactgaaggattcggagctggagctggtcgttgccggt
accgccaatgccgtgctgatggtggaatccgaagccgcgctgctgtccgaagacgtgatg
ctgggcgccgtgaccttcggtcaccgcgaaatgcagaaggtcatcaacgcgatcaacgaa
ctgaccgtggaagccggcaccaagccgtcgacctgggtcgccccggccaagaacgacgtg
ctgatcagcgccctgcaggaagccatcggcccgcgtctgggcgaggccttccaggtgcgc
gacaagctgcagcgccgcgacgccatctcggcgatcaagaaggacgtggtcgagtcgctg
gccggccgcgttgccgctgaaggctggaacccggccgagctgtcgaaggaattcggcgag
ctggaatacagcaccatgcgcaactcggtgctggacaccaaggtccgcattgacggccgt
gcgctggacaccgtccgcccgatcgcagtgaagaccggcatcctgccgcgtacccacggt
tcctcgctgttcacccgcggtgaaacgcaggccatcgtgaccatcaccctgggcaccgcc
cgtgatggccaggtcatcgatgccgtctccggtgagtacaaagagaacttcctgttccat
tacaacttccccccctactcggtgggtgaaaccggccgcatgatgggcccgaagcgtcgc
gagatcggccacggccgtctggccaagcgcggcgtgctggcagtgatgccgtcgctggaa
tccttcccgtacaccatccgcgtcgtctcggaaatcaccgagtcgaacggttcctcgtcg
atggcgtcggtctgcggctcgtcgctggccctgatggacgccggcgtgccggtgaaggct
ccggtggcgggtatcgccatgggcctggtcaaggaaggcgatcgcttcgtcgtcctgtcc
gacatcctgggtgacgaagatcacctgggcgacatggacttcaaggttgccggtaccgct
gagggcatctccgccctgcagatggacatcaagatcgaaggcatcaccgaagagatcatg
aagcaggctctgcagcaggccaaggctggccgtctgcacatcctgggcgaaatggcccac
ggcctgaccgccccgcgtgaggagctgtcggactacgcgccgcgcctgctgaccatcaag
atccacccggacaagatccgcgaagtgatcggcaagggtggttcgaccatccaggccatc
accaaggaaaccggcacccagatcgacatccaggatgacggcaccatcgtcattgcttcg
gtcaatgccatcgctgcccaggccgccaaggcccgcatcgagcagatcacctcggacgtc
gagccgggccgcatctacgaaggcaaggtcgccaagatcatggacttcggtgcgttcgtc
accatcctgccgggcaaggacggcctggtccacgtgtcgcagatctccagcgaccgcgtc
gagaaggtcggcgacgtgctgaaggaaggcgatgtggtcaaggtcaaggtgctggaagtc
gacaagcagggccgtatccgcctgtcgatgaaggccgtcgaggaaggcgaaggcgccacc
gccgagtaa
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