Stenotrophomonas indicatrix: DAIF1_29770
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Entry
DAIF1_29770 CDS
T07128
Symbol
rimO
Name
(GenBank) ribosomal protein S12 methylthiotransferase RimO
KO
K14441
ribosomal protein S12 methylthiotransferase [EC:
2.8.4.4
]
Organism
sinc
Stenotrophomonas indicatrix
Brite
KEGG Orthology (KO) [BR:
sinc00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03009 Ribosome biogenesis [BR:
sinc03009
]
DAIF1_29770 (rimO)
Enzymes [BR:
sinc01000
]
2. Transferases
2.8 Transferring sulfur-containing groups
2.8.4 Transferring alkylthio groups
2.8.4.4 [ribosomal protein uS12] (aspartate89-C3)-methylthiotransferase
DAIF1_29770 (rimO)
Ribosome biogenesis [BR:
sinc03009
]
Prokaryotic type
ribosomal protein modification factors
DAIF1_29770 (rimO)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Radical_SAM
UPF0004
TRAM_2
TRAM
CLP1_P
YajR_YAM
PrmA
Motif
Other DBs
NCBI-ProteinID:
QBR45394
LinkDB
All DBs
Position
complement(3247109..3248470)
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AA seq
453 aa
AA seq
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MSQLNPKVGFVSLGCPKALVDSERILTQLRSEGYDIVPSYDSADVVVVNTCGFIDSAVTE
SLDAIGEAMNQNGKVIVTGCLGKRPEQIREAYPNVLAVSGPQDYQSVMEAVHAALPPKHD
PFVDLVPDYGIKLTPRHYAYLKISEGCNHHCSFCIIPSMRGKLVSRPVDEVLREAERLVR
GGVRELLVVSQDTSAYGVDVKYAEKMWRDKAYQTRLKALCEGLSELDAWVRMHYVYPYPH
VDDVVPLMAENRILPYLDIPFQHASPRILRLMKRPGAVEKTLERVQNWRRIAPDITVRST
FIVGFPGETEAEFEELLSFLDEAQLDRVGAFAYSPVEGATANNLPDPVPEEVKQERLARF
MEKQAQISASRLEAKIGTVQQCLVDAIEGDIAVARSKADAPEIDGLVHIQNADQVALRVG
EFVDVEITESDEHDLYGDALPPTTRPAFDLKVL
NT seq
1362 nt
NT seq
+upstream
nt +downstream
nt
atgtcccagctgaaccccaaagtcggcttcgtcagccttggctgcccgaaggccctcgtc
gattccgagcgcatcctcacccagctgcggtcggaaggctacgacatcgtcccgtcctac
gattcggccgacgtggtggtggtcaacacctgtggcttcatcgattcggcggtgaccgaa
tcgctggatgccatcggcgaggcgatgaaccagaacggcaaggtcatcgtcaccggctgc
ctgggcaagcgcccggagcagatccgcgaggcgtacccgaacgtgctggcggtgtccggg
ccgcaggattaccagagcgtgatggaagcggtgcatgcggcgttgccgcccaagcacgac
ccgttcgtggatctggtgccggactacggcatcaagctgaccccgcgccactacgcatac
ctgaagatttccgaaggctgcaaccaccactgcagcttctgcatcattccgtcgatgcgc
ggcaagctggtctcgcgtcccgtggacgaggtgctgcgcgaagccgagcgcctggtgcgc
ggcggtgtgcgcgaactgctggtggtttcgcaggacacctctgcctacggcgtggatgtg
aagtacgccgagaagatgtggcgcgacaaggcctaccagacccgcctgaaggcactgtgc
gaaggcctgtccgaactggatgcgtgggtgcgcatgcactacgtctatccgtatccgcac
gtcgatgacgtggtgccgctgatggccgagaaccggatcctgccgtacctggacatcccg
ttccagcacgccagcccgcgcatcctgcgcctgatgaagcgccccggcgcggtcgagaag
accctggagcgggtgcagaactggcgccgcatcgcgccggacatcaccgtgcgttcgacc
ttcatcgtcggtttcccgggcgagaccgaggccgagttcgaagagctgctgtccttcctg
gacgaagcgcagctggaccgcgtcggtgcgttcgcctactcgccggtggagggcgctacg
gccaacaacctgccggacccggtgccggaagaagtgaagcaggaacgactggcgcgcttc
atggagaagcaggcgcagatttcggcttcgcgtctggaagccaagatcggcacggtgcag
caatgcctggtcgatgccatcgaaggcgatatcgcggtggcccgttccaaggccgatgcg
ccggagatcgacggcctggtgcatatccagaacgcagaccaggtggcgctgcgcgtgggt
gagttcgtcgacgtggaaatcaccgagagcgacgagcacgatctctacggcgacgcactg
ccgccgaccacgcgcccggcattcgacctcaaggtgctgtga
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