KEGG   Stenotrophomonas indicatrix: DAIF1_30820
Entry
DAIF1_30820       CDS       T07128                                 
Symbol
srmB
Name
(GenBank) ATP-dependent RNA helicase SrmB
  KO
K03724  ATP-dependent helicase Lhr and Lhr-like helicase [EC:5.6.2.6 5.6.2.4]
Organism
sinc  Stenotrophomonas indicatrix
Brite
KEGG Orthology (KO) [BR:sinc00001]
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03400 DNA repair and recombination proteins [BR:sinc03400]
    DAIF1_30820 (srmB)
Enzymes [BR:sinc01000]
 5. Isomerases
  5.6  Isomerases altering macromolecular conformation
   5.6.2  Enzymes altering nucleic acid conformation
    5.6.2.4  DNA 3'-5' helicase
     DAIF1_30820 (srmB)
    5.6.2.6  RNA 3'-5' helicase
     DAIF1_30820 (srmB)
DNA repair and recombination proteins [BR:sinc03400]
 Prokaryotic type
  Other factors with a suspected DNA repair function
   DNA helicases
    DAIF1_30820 (srmB)
SSDB
Motif
Pfam: WH_Lhr DEAD_assoc DEAD Helicase_C ResIII
Other DBs
NCBI-ProteinID: QBR45498
LinkDB
Position
3372729..3375188
AA seq 819 aa
MKRSDALQRLHEWFGSRGWRPLPFQRAMWRHYLAGESGLLHTPTGSGKTLAMFGGPLLQA
MLDPPPVPRRASAVRPLQVLWVTPLRALASDTARALQAPIDGLGLGWRVGLRSGDASNRD
RRLAREGRIDVLVTTPESLALLLSYPDTLERMRQLRCVVVDEWHELLGNKRGVLLQLNLA
LLREAAPAMQLWGLSATLGNLPQARDVLLPHRPQATIVEGARQRPVTIRSLLPEPGERFP
WAGHLGLSQLPRVLDALFRARSSLLFTNTRAQAELWHQALAAVWPEDAGTLALHHGSLDP
TLRQQVEDGLRAGTLRCVVATSSLDLGVDFPEVDQVLQLGSPKGVARLRQRAGRARHRPG
ASGQILCIPSHALELAEYAAARHALHDRVIEARRPPTLSLDVLAQHAVSRALAGGFNADA
LLEQVRGTHAFAALEDAQWNAVIDFIVQGGRALSRYPEFHKVVRDADGVYRMPDRRQALR
HRLSIGTISSDGSVRVQFLRGGSLGAVEEQFASRLRRGDRFQFAGRLLELVQLRDMTAFV
RVARGGGDGVVPRWQGGQLPLSMPLGRELEKVLSGADQSAESRWLAPLLALQSQLSAAPS
PDHLLVEDVRRREGQFLFVYPFAGRHVHEALAALLALRCTRRQRNSIGYAVNDHGLVLAP
ATPVDLQEQDWRAMLDAGDLLQDLREAVNLGELARRQFRGIARVAGLLVPSLPGGMPRSL
RQLQASAGLLHDVLREHDPEHLLLALAEQEVLHDSLDLPGLQQVLARIATRSLSLQRPSS
LTPLAFPLWAERLRGQFSNEDWRTRVQRAAQQLERRHGR
NT seq 2460 nt   +upstreamnt  +downstreamnt
atgaagcgcagcgatgcgctgcagcgcctgcacgagtggttcggcagccgcggctggcgc
cccctgcccttccagcgcgcgatgtggcgtcactatctggcgggcgaatcgggcctgctg
cacaccccaaccggcagcggcaaaactcttgccatgttcggcggccccttgttgcaggcg
atgctcgacccgccccccgtaccgcgtcgcgccagcgcggtacgcccgctgcaggtgctg
tgggtaacgccgctgcgtgcactggccagcgataccgcacgtgcgctgcaggcaccgatc
gacggccttggcctgggctggcgcgtggggctgcgcagcggcgatgccagcaaccgcgac
cggcgcctggcccgcgaaggtcgcatcgacgtgctggtcaccacgccggagtcgctggcg
ctgctgctcagctatcccgacacccttgagcgcatgcgccaactgcgctgcgtggtggtg
gacgaatggcacgaactgctgggcaacaagcgcggcgtgctgctgcagttgaatctggcg
ctgctgcgtgaggcagccccggcgatgcagctgtgggggctgtcggccacattgggcaac
ctgccacaggcacgcgacgtactgctgccacaccgtccacaggcaacgatcgtggaaggt
gcacggcagcggccggtgacgatccgcagcctgctgcccgaacccggcgaacgctttcca
tgggccgggcatcttggcctttcccagcttccgcgcgtgctcgacgcgctgttccgtgca
cgcagcagcctgctcttcaccaatacccgtgcgcaggcggaactgtggcaccaggccctc
gcagccgtgtggccggaagatgccggcacgctcgccctgcaccatggatcattggatccc
acgctgcgacagcaggttgaggacggactgcgtgcgggcacgctgcgctgcgtggtggcc
acctccagcctggatctgggcgtggactttccggaagtggaccaggtgctgcagctgggc
agcccgaagggcgtggcgcgcctgcgccagcgcgccgggcgtgcgcgccatcggcccggt
gccagcggccagatactgtgcattcccagccatgcgctggaactggccgagtacgcggcg
gcccggcacgcgttgcatgacagggtgatcgaagcgcgacgtcctcccacgttgtcgctg
gacgtattggcccagcacgccgtcagtcgcgcgctggcgggcggcttcaacgccgatgca
ctgctggaacaggtccgtggcacgcatgccttcgccgcgctggaggacgcacagtggaat
gcggtgatcgatttcatcgtgcagggcggacgtgcattgtcccggtacccggagttccat
aaggtggtacgcgatgccgacggcgtgtaccgcatgcccgatcgccgccaggcgctgcgc
catcggctgtcgatcggcaccatcagcagcgacggaagcgtgcgcgtacagttcctgcgt
ggcggcagcctgggcgcggtggaagagcagttcgccagccgcctgcgccgcggcgaccgt
ttccagtttgcagggcggctgctggagctggtgcagctgcgcgacatgaccgcgttcgtg
cgcgtggcgcgcggtggtggtgatggcgtggtaccgcgctggcagggcggtcaactgcca
ctgtcgatgccgctgggccgcgaactggaaaaggtgctgtcaggcgccgaccagagcgcg
gagtcgcggtggcttgcgccgctgctggcattgcagtcgcagctgtctgcggcgccatcg
cccgaccacctgctggtggaagacgtgcgccgacgcgaaggccagttcctgttcgtctat
ccctttgcgggccgccatgtgcacgaagcgctggccgcgctgctggcccttcgctgcacc
cgtcggcaacgcaacagcatcggctatgcagtgaatgaccatggcctggtgctcgctccg
gccacgccggtggatctgcaggaacaggactggcgggcaatgctggatgctggcgatctg
ctgcaggacctgcgcgaagcggtgaacctgggcgagctggcgcgccgccagttccgcggc
atcgcgcgcgtagcgggcctgctggtacccagcctgccgggtggcatgccacgctcgctg
cgccagctgcaggcctccgccggactgctgcatgacgtgctgcgcgagcacgacccggag
catctgctgctggcattggccgagcaggaagtactgcacgacagcctcgacctgcccggg
ttgcagcaagtgctggcacgcatcgccacacgttcgttgtccctgcagcggccctcatca
ctgaccccgctggcatttcccttgtgggccgaacgcctgcgtgggcagttcagcaatgaa
gactggcgcacgcgcgtgcagcgtgccgcgcagcagctggagcgccgccatggccgctga

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