Stenotrophomonas indicatrix: DAIF1_32330
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Entry
DAIF1_32330 CDS
T07128
Symbol
recQ
Name
(GenBank) ATP-dependent DNA helicase RecQ
KO
K03654
ATP-dependent DNA helicase RecQ [EC:
5.6.2.4
]
Organism
sinc
Stenotrophomonas indicatrix
Pathway
sinc03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
sinc00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
DAIF1_32330 (recQ)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
sinc03019
]
DAIF1_32330 (recQ)
03400 DNA repair and recombination proteins [BR:
sinc03400
]
DAIF1_32330 (recQ)
Enzymes [BR:
sinc01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
DAIF1_32330 (recQ)
Messenger RNA biogenesis [BR:
sinc03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
DAIF1_32330 (recQ)
DNA repair and recombination proteins [BR:
sinc03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
Supressor
DAIF1_32330 (recQ)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RQC
DEAD
HRDC
RecQ_Zn_bind
Helicase_C
ResIII
PSD2
Motif
Other DBs
NCBI-ProteinID:
QBR45649
LinkDB
All DBs
Position
3561707..3563512
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AA seq
601 aa
AA seq
DB search
MASRPAHDLLRRVFGYDDFRGPQQDIVEHVAAGHDALVLMPTGGGKSLCYQVPALLRDGC
GIVISPLIALMQDQVEALRQLGVRAEFLNSTLDAETAGRVERELLAGELDMLYVAPERLL
TGRFLSLLSRSRIALFAIDEAHCVSQWGHDFRPEYRQLTVLHERWPEIPRIALTATADPP
TQREIAERLDLAEARHFVSSFDRPNIRYTVVQKDNARKQLSDFLRSHRSEAGIVYCMSRR
KVEETAEFLCTQGFNALPYHAGLPTEVRANNQRRFLREDGIVMCATIAFGMGIDKPDVRF
VAHTDLPKSMEGYYQETGRAGRDGEAAEAWLCYGLGDVVLLKQMIEQSEASEERKQLERS
KLDHLLGYCESMQCRRQVLLAGFGETYPKPCGNCDNCLTPPAAWDATIPAQKALSCVYRS
GQRFGVGHLIDVLRGSENEKVKQQGHDKLSTYAIGRDLDARTWRSVFRQLVAASLLEVDS
EGHGGLRLTDASRDVLTGRRQISMRRDAVSASAGRERSAQRTGLSVLPQDLALFNALRGL
RAELAREQNVPAFVIFHDSTLRNIAEQRPTSLDELARVGGIGGTKLSRYGPRLVEIVREE
G
NT seq
1806 nt
NT seq
+upstream
nt +downstream
nt
atggcttcccgtcccgcgcacgacctgctccgccgcgtctttggttacgacgatttccgt
ggtccgcagcaggacatcgtggagcatgtggctgccggtcacgatgccctggtgctgatg
cccaccggcggcggcaaatcactgtgctaccaggtgcccgccctgctgcgtgacggctgt
ggcatcgtcatctcgccgctgatcgcactgatgcaggaccaggtcgaagccctgcgccag
ctcggcgtgcgcgccgaattcctgaactcgaccctggacgccgaaacggccggccgggtc
gaacgcgaactgctcgccggtgagctcgacatgctctatgtcgctcccgagcgcctgctg
accggccgcttcctgtcgctgctgtcgcgcagccggatcgccctgttcgccatcgacgaa
gcccattgcgtgtcgcaatggggccacgacttccgccccgaataccggcagctgaccgtc
ctgcacgagcgctggccggagattccgcggatcgccctgaccgccaccgccgacccgcca
acccagcgcgagatcgccgagcggctggacctggccgaagcacgtcacttcgtcagctcc
ttcgatcgccccaacatccgctacaccgtggtgcagaaggacaacgcccgcaagcagctg
agcgatttcctgcgcagccatcgcagcgaggccggcatcgtctactgcatgtcacggcgc
aaggtggaggaaaccgccgagttcctgtgcacgcaggggttcaatgccctgccctaccac
gccggcctgcccacggaagtgcgtgccaacaaccagcgccggttcctgcgcgaggacggc
atcgtcatgtgcgcgaccatcgccttcggcatgggcatcgacaagccggacgtacgcttt
gtcgcccataccgacctgcccaagtcgatggaaggctactaccaggaaaccggccgcgcc
gggcgcgatggcgaagccgccgaggcctggctctgctacggcctgggcgatgtggtactg
ctcaagcagatgatcgagcagtccgaggccagcgaggagcgcaagcagctggagcggtcc
aagctcgaccacctgctgggctactgcgaatcgatgcagtgccgccgccaggtgctgctg
gccggtttcggcgagacctatcccaagccctgcggcaactgcgataactgcctcaccccg
ccggcggcctgggacgccaccatccccgcgcagaaggcgttgagctgtgtataccgcagt
ggccagcgcttcggcgtcggccacctgatcgacgtcctgcgcggcagcgagaacgagaag
gtcaagcagcagggccacgacaagctgagcacctacgccatcggccgcgacctggacgcg
cgcacctggcgcagcgtgttccgccagctggtggccgccagcctgctggaagtggacagc
gagggccacggtggcctgcgcctgaccgatgccagccgcgatgtgctgaccggtcgccgc
cagatcagcatgcgccgcgatgcagtcagtgccagcgccgggcgcgaacgcagcgcgcaa
cgcaccggcctgtcggtgctgccgcaggacctggccctgttcaatgcgctgcgcggcctg
cgcgccgagctggcgcgcgagcagaacgtgccggccttcgtgatcttccacgacagcacc
ctgcgcaacatcgccgaacagcgcccgacctcgctggacgagctggcccgggtcggtggc
atcggcggcaccaagctcagccgctatggccccaggttggtcgagatcgtgcgcgaagag
ggatga
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